Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 4.2e-306 1053.9 546 100.0
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 2.7e-228 795.4 527 76.7
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 1.9e-210 736.1 523 73.4
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 1.3e-177 627.1 514 63.2
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 2.1e-172 609.8 539 58.6
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 6.1e-172 608.2 540 60.0
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 5.2e-171 605.1 539 59.4
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.3e-169 600.5 541 59.5
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 1.7e-169 600.1 585 55.6
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 7.8e-167 591.3 537 58.1
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 5.6e-165 585.1 545 56.1
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 5.6e-165 585.1 537 57.4
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 9.5e-165 584.3 557 58.2
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 8.0e-164 581.3 540 56.7
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 1.8e-163 580.1 594 53.7
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 5.7e-162 575.1 543 57.1
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 1.7e-161 573.5 531 57.6
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 7.0e-160 568.2 538 57.2
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 1.6e-159 567.0 537 56.1
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 1.6e-159 567.0 543 56.2
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 1.3e-158 563.9 539 57.5
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 1.7e-158 563.5 529 57.3
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 5.0e-158 562.0 542 56.3
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 6.6e-158 561.6 532 58.1
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 2.5e-157 559.7 539 54.7
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 9.5e-157 557.8 527 56.9
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 2.8e-156 556.2 527 57.1
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.4e-155 553.9 534 57.1
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.8e-155 553.5 527 56.9
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 3.1e-155 552.7 539 54.5
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 4.0e-155 552.4 463 60.3
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 5.2e-155 552.0 515 56.3
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 6.8e-155 551.6 519 56.6
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 1.5e-154 550.4 543 55.8
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 3.2e-152 542.7 461 63.6
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 4.1e-152 542.3 523 55.3
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 4.1e-152 542.3 518 55.2
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 9.2e-152 541.2 518 56.2
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 4.6e-151 538.9 524 55.7
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 1.7e-150 537.0 446 61.4
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 5.0e-150 535.4 536 54.7
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 8.6e-150 534.6 514 55.8
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 1.5e-149 533.9 531 55.6
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 5.6e-149 531.9 525 54.1
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 2.1e-148 530.0 524 54.4
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 1.4e-147 527.3 524 55.7
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 4.0e-147 525.8 515 54.2
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 2.0e-146 523.5 528 53.6
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 7.5e-146 521.5 524 53.6
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 4.9e-145 518.8 441 61.5
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 8.3e-145 518.1 516 53.9
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 8.3e-145 518.1 497 56.3
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 3.2e-144 516.2 558 50.7
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 1.2e-143 514.2 538 54.6
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 2.7e-143 513.1 435 61.1
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 4.6e-143 512.3 526 53.6
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 3.0e-142 509.6 479 58.5
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 3.6e-140 502.7 528 51.7
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 3.1e-139 499.6 508 54.3
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 1.2e-138 497.7 496 55.6
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 9.9e-138 494.6 420 63.1
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 1.7e-137 493.8 412 61.2
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 1.7e-137 493.8 561 49.9
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 3.8e-137 492.7 516 53.3
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 4.9e-137 492.3 516 53.3
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 6.4e-137 491.9 434 58.8
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 8.4e-137 491.5 510 53.9
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 8.4e-137 491.5 518 52.7
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 3.2e-136 489.6 515 52.4
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 4.1e-136 489.2 508 53.9
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 4.1e-136 489.2 517 52.6
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 2.1e-135 486.9 510 52.9
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 3.0e-134 483.0 431 57.5
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 6.6e-134 481.9 433 57.7
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 6.6e-134 481.9 433 57.7
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 6.6e-134 481.9 433 57.7
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 3.3e-133 479.6 436 57.6
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 4.3e-133 479.2 526 50.8
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 5.6e-133 478.8 588 46.3
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 1.2e-132 477.6 434 57.6
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 8.1e-132 474.9 521 49.9
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 1.4e-131 474.2 526 49.4
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 6.9e-131 471.9 529 49.5
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 7.6e-130 468.4 534 48.3
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 4.9e-129 465.7 520 50.6
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 5.4e-128 462.2 469 53.5
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 1.7e-126 457.2 513 51.3
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 2.3e-126 456.8 517 51.6
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 8.7e-126 454.9 421 60.1
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 1.4e-123 447.6 455 53.0
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 3.8e-121 439.5 484 49.4
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 7.9e-119 431.8 319 67.4
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 7.9e-119 431.8 252 79.8
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 6.7e-118 428.7 371 59.0
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 4.3e-117 426.0 440 53.6
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 1.3e-116 424.5 549 46.8
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 5.3e-107 392.5 516 42.2
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 1.0e-105 388.3 265 69.1
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 3.2e-104 383.3 540 41.3
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 1.1e-101 374.8 542 39.5
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 1.2e-87 328.2 257 63.8
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 4.7e-87 326.2 211 72.5
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 3.4e-82 310.1 454 44.1
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 2.9e-81 307.0 253 56.9
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 6.5e-81 305.8 410 46.1
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 1.4e-75 288.1 269 54.3
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 5.0e-73 279.6 459 37.3
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 4.8e-68 263.1 246 55.7
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 5.7e-53 213.0 246 44.3
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 9.5e-48 195.7 461 29.7
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 1.2e-45 188.7 176 56.8
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 5.8e-37 159.8 232 44.0
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 6.6e-33 146.4 186 47.8
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 2.4e-27 127.9 105 64.8
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 4.1e-27 127.1 196 37.2
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 4.1e-27 127.1 136 47.1
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 2.5e-24 117.9 233 35.6
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 3.6e-23 114.0 313 27.8
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 4.7e-23 113.6 124 51.6
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 3.2e-19 100.9 274 32.8
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 1.2e-18 99.0 224 31.7
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 2.3e-17 94.7 182 33.5
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 4.3e-16 90.5 42 97.6
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 3.6e-15 87.4 161 39.8
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.4e-14 84.7 101 44.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.0e-14 84.0 130 39.2
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 9.9e-13 79.3 39 87.2
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 1.9e-11 75.1 65 58.5
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 8.7e-09 66.2 38 76.3
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 3.6e-07 60.8 153 32.0
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 4.8e-07 60.5 176 27.3
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 8.1e-07 59.7 111 34.2


User provided reference genes

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