Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 3.3e-311 1070.8 529 100.0
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.1e-231 806.6 525 76.8
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 4.6e-217 758.1 527 71.5
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 6.1e-217 757.7 526 70.0
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.5e-215 753.1 526 69.6
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 3.3e-215 751.9 566 67.0
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.6e-214 749.6 527 70.4
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 4.8e-214 748.0 537 70.2
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 6.9e-213 744.2 525 70.9
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.0e-212 742.7 526 69.4
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.3e-211 740.0 532 69.0
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 2.9e-211 738.8 532 70.3
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 6.5e-211 737.6 530 69.4
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 1.4e-210 736.5 527 68.3
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 2.5e-210 735.7 526 68.6
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 3.2e-210 735.3 524 68.9
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 3.6e-209 731.9 527 68.7
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 3.6e-209 731.9 533 67.5
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 7.9e-209 730.7 541 67.7
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 7.9e-209 730.7 523 69.2
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.0e-208 730.3 529 67.9
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.4e-208 729.9 523 67.9
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 2.3e-208 729.2 527 68.1
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 8.8e-208 727.2 529 67.1
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 1.5e-207 726.5 563 65.2
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 3.3e-207 725.3 533 67.4
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.3e-206 723.4 533 67.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 6.3e-206 721.1 525 67.6
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.1e-205 720.3 527 67.7
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.8e-205 719.5 522 67.2
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 4.1e-205 718.4 519 67.6
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.5e-204 716.5 523 67.3
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 5.9e-204 714.5 522 66.7
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 1.7e-203 713.0 532 67.3
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 2.2e-203 712.6 531 67.8
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 3.8e-203 711.8 526 66.3
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.2e-202 708.8 524 65.6
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 7.2e-202 707.6 524 66.8
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.6e-201 706.4 531 67.2
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 3.6e-201 705.3 522 66.1
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 4.7e-201 704.9 551 63.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 6.1e-201 704.5 538 66.2
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 7.9e-201 704.1 522 65.9
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.4e-200 703.4 528 66.9
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 1.7e-198 696.4 547 65.3
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 2.2e-198 696.0 522 65.7
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.2e-198 696.0 523 65.0
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.8e-197 693.0 526 64.6
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 2.4e-197 692.6 530 66.0
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 7.0e-197 691.0 522 65.3
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.6e-196 689.1 524 65.1
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 7.7e-196 687.6 477 71.1
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.3e-195 686.8 536 65.7
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.3e-195 686.8 526 64.3
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.5e-194 683.3 523 64.8
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 4.2e-194 681.8 527 67.2
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 5.5e-194 681.4 529 65.2
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.8e-192 676.4 526 64.1
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.3e-192 676.0 503 65.0
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 3.0e-192 675.6 526 64.1
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 5.2e-192 674.9 526 64.1
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 8.8e-192 674.1 524 63.9
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 3.3e-191 672.2 525 63.6
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 2.2e-190 669.5 526 63.9
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 2.8e-190 669.1 528 63.1
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 8.2e-190 667.5 560 61.1
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 3.1e-189 665.6 482 69.5
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 3.5e-188 662.1 544 63.8
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.0e-187 660.6 523 63.3
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.1e-186 657.1 549 60.8
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 4.7e-185 651.7 547 61.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.7e-185 651.7 608 58.1
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 3.0e-184 649.0 485 65.8
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 6.8e-184 647.9 523 60.4
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 2.4e-181 639.4 529 61.1
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.2e-177 627.1 519 60.5
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 1.3e-166 590.5 523 58.1
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 9.2e-165 584.3 536 57.8
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 7.8e-164 581.3 523 59.3
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 3.1e-160 569.3 525 57.7
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 4.0e-160 568.9 581 53.4
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.2e-158 563.1 510 57.8
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.2e-156 557.4 533 54.6
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 3.5e-156 555.8 523 52.0
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 7.3e-154 548.1 524 51.9
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.2e-153 547.4 519 52.0
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.6e-153 547.0 627 51.0
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.6e-151 539.7 523 54.3
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.9e-149 533.5 317 82.0
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 2.8e-145 519.6 524 52.9
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 9.2e-141 504.6 552 52.2
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.9e-138 496.9 530 48.1
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 2.1e-137 493.4 302 80.5
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 4.0e-128 462.6 521 45.7
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 6.9e-128 461.8 301 71.4
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 6.4e-126 455.3 301 71.8
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 6.2e-113 412.1 553 44.5
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 9.3e-109 398.3 446 49.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 3.5e-108 396.4 558 43.2
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.6e-103 380.2 236 77.1
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 4.4e-90 336.3 641 32.0
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.7e-86 324.3 299 55.9
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.5e-77 293.9 205 75.1
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 4.0e-75 286.6 371 45.0
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 1.2e-74 285.0 206 72.8
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 7.7e-71 272.3 486 34.4
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 4.7e-68 263.1 473 35.3
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.4e-64 250.8 209 64.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.6e-55 221.5 208 57.7
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.7e-55 220.7 208 57.7
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.9e-54 217.2 208 56.7
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 6.8e-51 206.1 170 60.0
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 1.2e-50 205.3 108 83.3
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.9e-46 190.3 103 82.5
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 3.1e-35 154.1 183 46.4
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.1e-32 145.6 85 74.1
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 2.4e-24 117.9 130 46.9
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 8.7e-22 109.4 320 27.8
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.1e-19 102.4 442 25.6
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 2.8e-12 77.8 47 76.6
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 2.4e-11 74.7 54 72.2
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.4e-10 70.9 103 44.7
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.1e-08 65.9 31 87.1
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.1e-08 65.9 31 87.1
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.1e-08 65.9 31 87.1
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.1e-08 65.9 31 87.1
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 3.2e-08 64.3 31 83.9


User provided reference genes

Program Settings