Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.8e-230 802.4 442 100.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-75 288.1 179 81.6
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 6.9e-65 252.3 180 73.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-64 250.0 180 72.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 7.6e-64 248.8 180 72.2
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-63 248.4 180 71.7
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 5.0e-63 246.1 180 71.1
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 4.2e-62 243.0 180 70.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-61 241.5 181 70.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-61 239.6 188 67.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 8.7e-60 235.3 188 67.6
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.9e-59 234.2 179 67.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.3e-52 210.7 181 60.8
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 6.7e-52 209.1 178 62.4
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.0e-51 207.6 177 61.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.7e-50 203.4 175 60.0
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 6.9e-49 199.1 181 55.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 9.1e-49 198.7 174 60.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 9.1e-49 198.7 177 59.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-48 198.4 175 58.9
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.9e-48 196.1 176 59.7
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 7.7e-48 195.7 177 56.5
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.3e-47 194.9 178 56.2
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-47 194.1 175 58.3
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.2e-47 194.1 178 57.9
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 5.0e-47 193.0 196 55.1
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.5e-47 192.2 174 56.9
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.5e-47 192.2 174 56.9
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-46 191.8 176 58.5
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 3.2e-46 190.3 172 59.9
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.2e-46 190.3 169 56.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.2e-46 189.9 175 56.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 4.2e-46 189.9 190 55.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.2e-46 189.9 169 57.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.2e-46 189.9 172 57.0
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 4.2e-46 189.9 194 54.1
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 5.5e-46 189.5 169 59.8
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.5e-46 189.5 178 57.9
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-45 188.3 172 57.6
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.6e-45 188.0 175 57.1
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.1e-45 187.6 175 58.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 2.7e-45 187.2 176 56.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.7e-45 187.2 178 55.1
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 3.6e-45 186.8 178 53.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 4.7e-45 186.4 174 55.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.7e-45 186.4 169 58.0
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 4.7e-45 186.4 177 55.9
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.1e-45 186.0 173 56.1
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 7.9e-45 185.7 172 55.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.4e-44 184.9 170 56.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.4e-44 184.9 181 54.1
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.4e-44 184.9 172 55.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-44 184.5 178 53.9
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.3e-44 184.1 172 57.0
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 2.3e-44 184.1 177 55.4
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.3e-44 184.1 181 53.6
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 3.0e-44 183.7 178 53.9
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 5.1e-44 183.0 193 52.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.1e-44 183.0 169 55.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.1e-44 183.0 173 54.9
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.5e-43 181.4 178 53.9
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.5e-43 181.4 174 54.6
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-43 181.4 172 55.2
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-43 181.0 169 56.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.0e-43 181.0 182 55.5
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.6e-43 180.6 173 54.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.4e-43 179.9 172 53.5
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 4.4e-43 179.9 194 51.5
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 5.7e-43 179.5 172 57.6
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 7.4e-43 179.1 181 51.9
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 9.7e-43 178.7 175 52.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.7e-42 177.9 190 53.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.8e-42 177.2 178 52.2
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.7e-42 176.8 181 51.4
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 3.7e-42 176.8 174 54.6
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 8.2e-42 175.6 178 51.1
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 8.2e-42 175.6 175 52.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.1e-41 175.3 178 53.4
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.4e-41 174.9 173 52.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.4e-41 174.9 170 52.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.4e-41 174.9 177 52.0
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.4e-41 174.9 178 50.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.4e-41 174.1 179 48.6
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.4e-41 174.1 179 48.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.4e-41 174.1 179 49.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 4.1e-41 173.3 181 53.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 4.1e-41 173.3 194 49.0
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.1e-41 173.3 177 55.9
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.1e-41 173.3 202 50.0
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.3e-41 172.9 179 49.2
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.2e-40 171.8 154 57.1
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-40 171.8 201 49.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.5e-40 171.4 194 49.0
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.5e-40 171.4 201 48.8
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.5e-40 171.4 201 49.8
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.0e-40 171.0 181 54.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-40 171.0 177 54.2
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.6e-40 170.6 178 51.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.5e-40 170.2 173 53.8
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 7.7e-40 169.1 191 50.3
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 7.7e-40 169.1 194 50.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.0e-39 168.7 174 51.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.0e-39 168.7 174 51.7
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.0e-39 168.7 174 54.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.3e-39 168.3 177 50.8
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.7e-39 167.9 176 48.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.9e-39 167.2 170 54.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 6.5e-39 166.0 174 49.4
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.1e-38 165.2 150 54.0
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.9e-38 164.5 228 43.4
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-38 163.7 172 51.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 7.2e-38 162.5 172 48.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.2e-37 161.8 172 46.5
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.6e-37 161.4 180 47.2
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.1e-37 161.0 200 47.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 8.0e-37 159.1 177 45.2
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.0e-36 158.7 176 45.5
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-36 158.7 172 50.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.8e-36 157.9 176 44.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.8e-36 157.9 168 51.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-36 157.9 176 49.4
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.0e-36 156.8 194 44.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.2e-36 156.4 173 49.1
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 8.8e-36 155.6 172 50.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.1e-35 155.2 177 45.8
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.0e-35 154.5 177 48.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.3e-35 153.7 197 43.1
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.3e-35 153.7 197 43.1
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.3e-35 153.7 170 49.4
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.4e-35 153.3 166 47.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-34 151.4 193 46.1
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.7e-34 150.2 181 45.3
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.6e-32 144.1 172 43.0
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.5e-32 143.7 174 45.4
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.5e-32 143.3 173 43.9
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 5.9e-32 142.9 172 45.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.7e-32 142.5 172 45.3
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.7e-32 142.5 175 45.1
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 8.5e-31 139.0 172 41.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.2e-29 135.2 176 42.0
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.1e-29 134.4 169 42.6
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 6.1e-29 132.9 119 55.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.0e-28 132.1 171 42.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.0e-28 130.2 161 48.4
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.2e-27 128.6 191 40.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-27 127.9 136 48.5
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.4e-27 127.1 143 46.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.7e-27 126.3 123 53.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.7e-26 123.6 172 42.4
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.3e-26 122.5 176 43.2
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.4e-25 121.7 178 41.6
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.4e-25 120.9 174 40.2
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-24 118.2 140 42.9
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-24 117.5 138 43.5
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.5e-24 117.1 111 48.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.5e-24 116.7 149 46.3
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.9e-24 116.3 177 40.7
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.0e-23 115.5 181 40.9
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.7e-23 114.8 181 40.9
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.8e-23 113.6 115 47.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.5e-22 109.8 177 40.7
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.5e-22 109.8 177 40.1
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 5.0e-15 86.7 93 47.3
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-15 86.3 164 36.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 2.5e-14 84.3 99 48.5
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.6e-14 83.2 172 37.2
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.5e-11 75.1 84 47.6
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.5e-11 72.8 64 60.9
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.7e-10 71.6 211 27.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 5.4e-09 66.6 173 28.3
ECA238G4370 Erigeron canadensis HOM05D000493 ORTHO05D004444 7.0e-09 66.2 118 36.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 9.2e-09 65.9 211 24.6
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.8e-08 62.8 177 31.1
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 3.0e-07 60.8 151 31.8
ECA232G1406 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.3e-06 57.4 37 78.4


User provided reference genes

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