Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.8e-244 848.2 427 100.0
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.9e-208 729.2 427 84.5
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.7e-206 722.6 427 84.8
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.8e-204 715.3 427 83.4
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.1e-180 636.0 427 74.2
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 6.9e-179 630.9 423 73.8
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.7e-177 626.3 427 72.6
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.9e-177 624.8 427 72.6
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.3e-176 620.5 427 71.7
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 1.2e-175 620.2 427 71.9
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 7.9e-175 617.5 427 71.0
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 7.9e-175 617.5 427 71.2
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 6.7e-174 614.4 425 71.1
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.5e-173 613.2 427 70.5
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.3e-173 611.7 427 71.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.6e-172 609.8 421 71.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.6e-172 609.8 424 71.7
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.8e-172 608.2 427 70.0
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 6.3e-172 607.8 425 70.8
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.4e-171 606.7 427 71.7
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.4e-171 605.9 423 70.9
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 4.1e-171 605.1 425 71.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 9.0e-171 604.0 425 70.8
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.2e-170 603.6 425 70.8
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.4e-170 602.1 425 70.8
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.0e-169 600.5 432 69.7
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.3e-169 600.1 427 70.3
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.2e-169 599.4 425 69.2
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 2.9e-169 599.0 428 70.8
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 3.8e-169 598.6 425 69.9
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.2e-168 595.5 425 68.7
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 9.4e-168 594.0 425 69.4
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.2e-167 593.6 427 69.3
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-167 592.8 425 68.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.7e-167 592.4 425 69.6
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-166 589.7 425 67.8
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.3e-166 589.3 422 70.4
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 8.8e-166 587.4 425 68.2
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 8.8e-166 587.4 422 68.2
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.1e-165 587.0 422 69.7
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.5e-165 586.6 426 69.0
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 5.7e-165 584.7 425 68.9
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 7.4e-165 584.3 425 68.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 7.4e-165 584.3 427 67.7
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.7e-164 583.2 425 68.9
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.8e-164 582.4 428 66.8
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.8e-164 582.4 425 67.5
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.7e-164 582.0 422 68.2
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.7e-164 582.0 425 67.3
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 4.8e-164 581.6 425 69.4
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 8.2e-164 580.9 425 68.2
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 8.2e-164 580.9 425 68.2
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-163 579.7 422 68.0
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 3.1e-163 578.9 422 68.0
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 5.3e-163 578.2 422 67.3
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 6.9e-163 577.8 430 68.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 4.5e-162 575.1 427 68.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 4.5e-162 575.1 425 68.5
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 7.7e-162 574.3 427 67.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-161 573.9 428 67.1
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.0e-161 573.9 427 68.1
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-159 567.0 425 66.8
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.6e-159 565.5 426 66.7
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.4e-158 563.5 434 66.8
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.3e-158 562.8 425 66.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 3.0e-158 562.4 435 66.0
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.7e-157 558.1 427 66.5
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.7e-157 557.4 425 65.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.4e-155 553.5 427 65.3
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.8e-155 553.1 422 66.6
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.8e-155 553.1 423 64.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.3e-155 551.6 464 61.6
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 9.1e-155 550.8 459 63.0
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.0e-153 547.4 427 65.6
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.9e-153 545.8 423 66.7
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.4e-152 543.5 427 66.0
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.2e-152 542.0 427 65.1
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.6e-151 538.9 458 62.0
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.1e-151 538.1 429 63.2
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.4e-150 537.0 422 63.5
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.8e-150 536.6 403 65.5
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 2.3e-150 536.2 425 64.0
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.1e-149 533.9 426 62.9
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 9.7e-149 530.8 425 64.7
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.8e-148 529.3 426 62.7
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.1e-147 527.3 425 61.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.6e-146 523.5 426 62.0
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.7e-145 520.0 423 61.7
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.1e-144 517.3 426 62.2
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.9e-144 516.5 425 62.4
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.5e-144 516.2 426 61.3
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 3.2e-144 515.8 425 61.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 9.4e-144 514.2 427 60.9
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-143 513.8 427 60.9
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.2e-143 513.8 426 60.8
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.6e-143 513.5 439 61.5
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 2.7e-143 512.7 426 62.4
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.0e-142 510.8 383 67.1
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 3.0e-142 509.2 425 61.2
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 3.0e-142 509.2 425 61.2
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-141 506.5 426 61.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.0e-141 506.5 426 61.0
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.0e-141 506.5 425 60.5
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.6e-141 506.1 426 61.0
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.6e-141 506.1 425 60.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 4.4e-141 505.4 426 60.6
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 5.7e-141 505.0 425 60.9
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 8.2e-140 501.1 426 60.6
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.1e-139 500.7 425 59.1
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 3.1e-139 499.2 425 59.8
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 7.0e-139 498.0 324 75.9
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.5e-138 495.7 425 60.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 3.8e-137 492.3 426 58.9
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 6.5e-137 491.5 387 64.6
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.1e-136 490.7 422 58.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.7e-135 486.1 313 75.7
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.0e-134 482.3 426 58.9
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 6.3e-132 474.9 425 57.4
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.1e-131 474.2 383 63.2
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.1e-131 472.6 356 66.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 7.7e-130 468.0 424 55.9
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.2e-127 460.7 427 54.3
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 4.0e-126 455.7 427 52.9
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 6.8e-126 454.9 447 55.3
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 7.0e-123 444.9 451 51.4
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.1e-112 411.0 390 57.7
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 4.0e-110 402.5 430 50.7
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.3e-105 387.5 241 79.7
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.5e-104 384.0 400 53.8
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.7e-103 379.0 239 79.5
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 7.8e-98 361.7 354 55.9
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 6.2e-95 352.1 356 54.8
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.2e-94 349.0 429 48.7
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.1e-91 341.3 336 53.3
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.6e-89 332.0 284 56.7
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 4.0e-70 269.6 430 38.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.8e-63 246.1 214 59.8
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 6.2e-63 245.7 325 45.8
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 7.6e-61 238.8 348 39.1
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 5.7e-56 222.6 176 67.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-55 220.3 194 62.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.6e-53 213.8 359 40.9
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-50 204.1 194 58.8
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.4e-46 191.4 138 66.7
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.8e-46 191.0 305 41.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 2.8e-39 167.2 248 41.9
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.9e-35 154.5 313 32.3
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 3.1e-30 137.1 193 42.5
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.6e-29 134.0 104 67.3
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.6e-24 117.5 119 49.6
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 5.7e-24 116.3 78 66.7
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 5.7e-24 116.3 78 66.7
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.7e-23 114.8 76 72.4
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 2.2e-20 104.4 124 44.4
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 7.2e-19 99.4 53 92.5
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.8e-14 84.7 61 70.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.1e-11 75.5 124 39.5
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.0e-09 68.9 64 51.6
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.5e-08 65.1 53 62.3
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 2.0e-08 64.7 37 78.4
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-06 58.9 80 42.5
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-06 58.2 127 34.6
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.8e-06 58.2 52 57.7
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.2e-06 57.4 75 44.0


User provided reference genes

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