Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.8e-295 1018.5 512 100.0
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 3.7e-264 914.4 511 88.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.1e-255 886.3 511 87.5
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.9e-255 885.6 512 86.3
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-222 776.2 520 75.0
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.3e-220 768.5 520 74.6
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 3.7e-219 765.0 525 74.7
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 3.7e-219 765.0 496 76.8
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.8e-218 762.7 519 74.4
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.9e-218 760.8 455 81.3
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.2e-217 760.0 523 74.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 8.5e-216 753.8 522 74.5
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.2e-215 751.5 523 74.2
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 4.2e-215 751.5 438 84.0
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 7.2e-215 750.7 517 73.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 9.4e-215 750.4 527 73.6
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.6e-214 749.6 436 84.2
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.6e-214 749.6 438 83.6
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.6e-214 749.6 462 79.4
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.1e-214 749.2 517 72.9
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 2.1e-214 749.2 451 80.9
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.6e-214 748.4 456 80.3
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 2.3e-213 745.7 455 80.2
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 3.0e-213 745.3 468 79.7
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 3.0e-213 745.3 447 81.4
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 5.1e-213 744.6 438 83.1
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 6.7e-213 744.2 530 73.0
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.3e-212 741.9 438 83.1
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.7e-212 741.1 438 82.6
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.3e-211 740.0 471 78.1
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.7e-211 739.6 465 78.9
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 2.8e-211 738.8 437 82.2
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 2.8e-211 738.8 438 82.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 8.2e-211 737.3 519 71.7
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.1e-210 736.9 463 78.2
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.8e-210 736.1 524 71.8
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 5.3e-210 734.6 466 77.7
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.0e-208 730.3 466 76.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 2.9e-208 728.8 466 75.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 2.9e-208 728.8 474 77.2
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 5.0e-208 728.0 476 76.5
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.1e-207 726.9 466 75.8
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.1e-207 726.9 466 77.0
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.1e-207 726.9 523 71.1
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.4e-207 726.5 424 83.5
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.9e-207 726.1 424 83.3
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 3.2e-207 725.3 531 69.5
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 4.2e-207 724.9 529 70.5
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.2e-206 723.4 431 81.7
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.1e-206 722.6 509 71.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.7e-206 721.5 437 81.0
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.1e-206 721.1 438 80.1
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.0e-205 720.3 530 70.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.8e-205 719.5 495 73.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.0e-205 718.8 516 70.9
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 3.9e-205 718.4 422 83.2
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.1e-205 718.0 498 72.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.0e-204 716.1 523 70.0
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.3e-204 715.3 422 82.0
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 5.7e-204 714.5 436 79.1
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 5.7e-204 714.5 441 80.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.7e-204 714.5 477 75.3
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.7e-203 713.0 439 79.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.2e-203 712.6 460 76.3
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.7e-203 711.8 424 82.3
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.7e-203 711.8 437 80.1
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 6.3e-203 711.1 437 79.9
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.8e-202 709.5 446 77.8
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 4.1e-202 708.4 446 78.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.3e-202 708.0 439 79.0
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 9.1e-202 707.2 515 70.5
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.6e-201 706.4 437 79.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.5e-201 704.9 456 76.8
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 4.5e-201 704.9 460 76.5
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 7.7e-201 704.1 479 74.1
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 5.0e-200 701.4 435 78.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 5.0e-200 701.4 431 78.7
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 8.5e-200 700.7 447 77.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.5e-199 699.1 424 79.7
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.2e-199 698.7 439 77.0
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 5.5e-199 698.0 436 79.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 3.6e-198 695.3 523 69.0
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 3.6e-198 695.3 523 69.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 4.7e-198 694.9 511 70.5
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.1e-196 690.3 453 75.3
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.5e-196 689.9 437 76.9
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.0e-196 689.5 458 73.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.2e-195 686.0 436 77.3
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.4e-194 683.3 439 76.3
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.1e-194 682.2 444 75.2
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.1e-194 681.8 438 75.8
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 5.3e-194 681.4 438 76.3
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-193 680.2 422 79.4
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 5.0e-192 674.9 424 77.1
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 6.5e-192 674.5 424 76.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 8.5e-192 674.1 424 77.1
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.5e-192 674.1 431 75.6
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.2e-191 672.2 422 78.7
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.2e-191 671.8 424 77.1
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.2e-191 671.8 424 77.1
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.2e-190 670.2 432 75.2
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.7e-190 669.1 429 76.9
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 8.0e-190 667.5 424 76.4
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.3e-189 666.0 438 74.4
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.3e-189 666.0 424 76.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 2.3e-189 666.0 486 68.5
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.2e-189 664.8 462 73.4
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 6.8e-189 664.5 438 74.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.8e-187 659.1 399 81.2
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 8.3e-187 657.5 447 72.5
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 7.0e-186 654.4 472 69.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.7e-185 651.0 447 73.8
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 9.4e-183 644.0 406 77.6
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.2e-182 643.7 426 72.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.4e-180 635.6 428 71.7
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.4e-178 630.2 428 71.0
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.0e-177 626.3 502 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.9e-168 595.5 432 67.1
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.1e-165 585.9 365 78.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.5e-151 539.7 324 81.8
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.9e-147 526.2 303 85.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.1e-142 510.0 297 82.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 6.4e-139 498.4 426 59.6
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-138 496.9 311 77.8
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 4.2e-138 495.7 326 75.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 7.8e-137 491.5 302 78.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.7e-136 490.3 429 59.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 7.3e-135 485.0 434 56.9
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.8e-134 482.3 297 81.5
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-123 446.8 297 76.1
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.5e-122 442.2 277 79.1
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.3e-120 437.6 275 77.5
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.4e-117 426.8 425 54.4
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.1e-103 381.3 428 45.8
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 3.1e-93 346.7 242 73.1
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.5e-92 342.8 439 42.6
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.2e-78 295.4 176 80.1
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.8e-72 275.8 358 42.7
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.8e-56 222.6 133 79.7
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.0e-51 206.5 177 61.6
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 4.9e-46 189.9 160 65.0
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.0e-43 182.2 180 52.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.3e-43 181.0 130 69.2
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 6.6e-43 179.5 120 70.8
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.5e-42 175.6 114 75.4
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 6.6e-35 152.9 92 76.1
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 3.2e-29 134.0 90 72.2
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 3.5e-28 130.6 81 75.3
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 3.5e-28 130.6 81 75.3
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 6.0e-28 129.8 81 74.1
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.3e-27 127.9 95 63.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 6.6e-27 126.3 95 63.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 2.5e-26 124.4 95 62.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.6e-25 121.7 92 60.9
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 3.1e-24 117.5 78 73.1
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 3.2e-21 107.5 259 32.0
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 9.3e-21 105.9 82 65.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 7.8e-20 102.8 67 71.6
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 7.8e-20 102.8 67 71.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 7.8e-20 102.8 67 71.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.1e-16 92.4 57 80.7


User provided reference genes

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