Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1871.3 940 100.0
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1545.4 944 83.9
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1538.5 944 82.8
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1401.3 939 76.5
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1401.0 945 75.3
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1382.5 944 74.2
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1366.3 931 74.1
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1365.9 926 74.1
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1364.0 917 75.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1362.8 904 75.3
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 918 73.6
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1356.7 917 75.5
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1355.5 1009 70.5
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1355.1 895 75.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1351.7 938 72.9
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1351.7 943 72.1
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1350.1 933 73.8
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1349.7 946 72.2
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1347.8 938 72.8
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1339.3 910 74.3
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1339.3 906 73.6
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1337.4 897 74.4
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1333.5 938 72.3
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1333.5 893 73.9
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1333.2 917 74.0
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1331.6 885 75.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1327.8 926 72.0
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1325.1 909 73.3
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1325.1 904 73.9
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1323.1 899 74.1
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1322.4 913 73.1
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1320.4 916 72.6
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1318.1 887 74.7
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1317.4 886 74.5
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1315.4 903 73.8
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1315.1 935 71.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1315.1 948 70.4
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1313.9 927 72.3
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1313.9 889 74.4
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1312.7 923 72.0
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1312.7 910 73.2
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1311.2 901 72.6
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1311.2 907 72.5
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1309.7 951 71.6
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1308.1 949 70.6
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1306.2 913 72.2
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1305.8 908 72.5
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1305.8 932 73.6
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1304.7 897 73.0
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1300.8 944 70.6
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1297.7 873 74.2
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1296.2 939 70.8
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1294.3 906 72.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1286.6 881 73.0
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1281.9 926 70.8
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1277.7 952 69.0
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 916 72.1
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 903 71.0
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1261.5 1005 65.5
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1255.4 924 68.4
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1250.7 937 69.6
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1246.9 884 71.6
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1234.2 885 70.1
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1228.0 857 72.1
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1216.4 800 76.1
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1214.9 839 72.8
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1208.0 810 75.3
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1206.0 918 67.1
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1206.0 938 68.0
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1200.3 920 67.0
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1200.3 924 68.3
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1198.7 918 66.8
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1196.4 906 66.7
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1196.0 915 66.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1192.6 920 66.5
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1190.3 924 65.4
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1189.5 936 65.2
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1187.6 954 64.4
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1181.8 924 65.2
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1171.4 883 68.7
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1171.4 891 66.8
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1171.0 948 64.1
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1165.6 949 63.2
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1162.5 945 63.2
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1156.0 902 65.3
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1152.1 889 65.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1147.9 943 61.9
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1147.5 941 64.3
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1143.3 887 66.0
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1141.3 948 62.4
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1136.7 958 61.5
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1093.2 856 67.1
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1090.1 805 68.3
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1077.0 933 60.5
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 7.3e-298 1027.3 676 79.6
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.2e-289 1000.0 808 64.6
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 2.5e-282 975.7 871 55.8
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.6e-273 946.4 755 64.4
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.4e-269 933.3 884 52.4
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 7.4e-258 894.4 596 74.5
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.0e-255 886.3 597 74.7
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.2e-254 882.9 591 75.0
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.3e-241 840.5 584 74.0
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 3.7e-217 759.2 929 47.3
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 2.0e-207 726.9 548 67.3
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.4e-200 703.4 904 46.9
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 7.3e-197 691.8 534 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 5.7e-194 682.2 622 55.8
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.0e-190 671.4 442 74.4
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.5e-189 667.5 526 64.8
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 2.3e-187 660.2 718 47.8
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.9e-184 650.6 413 75.8
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 2.9e-161 573.5 393 72.0
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 5.3e-131 473.0 337 71.2
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.9e-118 430.3 265 79.6
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 2.7e-103 380.9 327 63.6
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 3.1e-99 367.5 289 65.1
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 9.1e-91 339.3 337 56.4
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 8.3e-84 316.2 216 75.0
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.7e-81 308.5 238 62.2
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 4.3e-64 250.8 172 71.5
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 7.5e-61 240.0 248 50.0
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.7e-52 212.2 235 44.3
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.9e-41 174.5 252 46.8
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.9e-36 157.5 98 79.6
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 3.2e-35 154.8 197 51.8
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-24 117.1 268 32.8
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 7.4e-24 117.1 410 24.6
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 2.9e-20 105.1 82 61.0
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 3.8e-20 104.8 86 67.4
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 9.3e-19 100.1 58 84.5
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.6e-15 89.4 69 63.8
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.9e-09 68.2 111 40.5
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.7e-07 62.8 37 83.8


User provided reference genes

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