Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 3.1e-164 581.6 279 100.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 4.5e-78 295.4 205 69.3
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.4e-76 290.4 251 57.8
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 9.4e-76 287.7 212 65.1
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.4e-74 283.9 253 57.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.3e-72 277.3 251 57.8
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.3e-72 277.3 252 57.1
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 7.2e-68 261.5 244 55.3
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 4.7e-67 258.8 250 55.2
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.1e-65 254.2 251 52.2
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 2.4e-63 246.5 251 52.2
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.3e-61 240.7 218 53.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.3e-61 240.7 250 51.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-60 237.7 241 50.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 4.2e-60 235.7 255 49.0
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 2.1e-59 233.4 253 50.6
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.1e-59 233.4 253 49.8
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 2.7e-59 233.0 224 53.6
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.6e-59 232.6 256 48.0
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.6e-59 232.6 219 50.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.1e-59 231.9 253 49.4
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 6.1e-59 231.9 250 48.0
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.0e-59 231.5 253 49.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 1.4e-58 230.7 222 50.9
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 3.0e-58 229.6 253 47.8
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.0e-58 229.6 219 49.8
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 4.0e-58 229.2 258 50.0
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 5.2e-58 228.8 224 52.7
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.2e-57 227.6 224 51.3
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-57 227.6 250 48.4
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.2e-57 227.6 224 49.1
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.0e-57 226.9 222 50.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.0e-57 226.9 253 47.8
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.6e-57 226.5 258 47.3
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.6e-57 226.5 235 51.1
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.3e-57 226.1 258 50.0
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.3e-57 226.1 250 47.6
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.4e-57 225.7 224 50.9
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 4.4e-57 225.7 246 46.3
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.7e-57 225.3 257 46.7
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-56 224.2 253 50.2
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.7e-56 223.8 257 46.7
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.7e-56 223.8 224 49.6
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.7e-56 222.6 185 58.4
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 3.7e-56 222.6 255 46.7
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-55 221.1 180 60.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.4e-55 220.7 279 48.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.8e-55 220.3 258 49.6
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 5.3e-55 218.8 237 46.8
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 7.0e-55 218.4 279 48.0
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.1e-55 218.0 255 47.1
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.2e-54 217.6 267 43.1
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.9e-54 215.3 216 51.4
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 5.9e-54 215.3 254 44.1
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.7e-54 214.9 253 45.1
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 7.7e-54 214.9 232 45.7
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.3e-53 214.2 215 47.0
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.2e-53 213.4 252 45.2
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.9e-53 213.0 257 45.9
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 6.5e-53 211.8 255 45.5
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.1e-52 211.1 218 48.2
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.9e-52 210.3 215 43.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 3.2e-52 209.5 223 46.2
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 4.2e-52 209.1 253 46.2
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 5.5e-52 208.8 254 44.5
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.2e-51 207.6 228 46.1
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.2e-51 207.6 248 43.1
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.2e-51 207.6 251 46.2
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 2.1e-51 206.8 246 45.1
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.6e-51 206.1 222 45.9
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.0e-51 204.9 222 45.9
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.0e-50 204.5 241 44.4
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.4e-50 204.1 253 43.5
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.3e-50 203.4 249 43.4
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.3e-50 203.4 226 45.1
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.0e-50 203.0 231 46.3
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.0e-50 203.0 248 43.1
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.2e-50 202.2 229 46.7
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 6.8e-50 201.8 221 47.5
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 8.8e-50 201.4 237 45.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.5e-49 200.7 226 44.7
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.5e-49 200.7 250 42.4
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.0e-49 200.3 219 48.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.4e-49 199.1 249 43.0
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 5.7e-49 198.7 223 48.0
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 7.5e-49 198.4 224 45.1
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 7.5e-49 198.4 197 50.8
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 9.8e-49 198.0 260 43.1
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.3e-48 197.6 201 47.8
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.7e-48 197.2 246 42.3
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.7e-48 196.1 249 42.6
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 3.7e-48 196.1 253 43.1
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.7e-48 196.1 213 45.5
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.3e-48 195.3 227 45.8
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 8.3e-48 194.9 199 50.3
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.4e-47 194.1 251 43.8
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.4e-47 194.1 244 43.4
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.4e-47 194.1 222 46.4
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.8e-47 193.7 253 43.1
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-47 193.4 247 42.1
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.4e-47 193.4 247 42.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.1e-47 192.6 264 40.2
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.1e-47 192.6 264 40.2
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.1e-47 192.6 264 40.2
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 5.4e-47 192.2 251 43.8
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 7.0e-47 191.8 216 45.4
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.2e-46 191.0 223 44.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.6e-46 190.7 249 42.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.0e-45 188.0 222 45.0
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.3e-45 187.6 249 41.0
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.7e-45 187.2 250 41.2
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.7e-45 187.2 251 39.8
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.3e-45 186.8 269 38.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.3e-45 186.8 254 40.2
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 2.9e-45 186.4 250 42.0
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 3.8e-45 186.0 247 40.5
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 3.8e-45 186.0 247 40.5
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 8.6e-45 184.9 254 41.7
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-44 184.1 221 45.2
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.1e-43 180.3 198 47.0
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.1e-43 180.3 262 39.7
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 2.8e-43 179.9 221 42.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-42 177.9 255 41.2
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.4e-42 177.6 297 35.7
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.8e-42 177.2 262 38.5
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.3e-42 176.8 199 45.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.8e-42 175.3 207 46.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.8e-42 175.3 207 46.9
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.2e-41 174.5 233 41.2
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.0e-41 173.7 163 54.0
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.6e-41 173.3 199 42.2
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.6e-41 173.3 166 53.0
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.8e-40 169.9 166 53.6
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.7e-40 169.5 199 44.7
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-39 167.9 250 40.0
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.8e-39 167.2 259 38.6
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.7e-38 163.3 267 36.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 4.5e-38 162.5 166 49.4
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.0e-37 161.4 222 41.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.7e-37 160.6 166 48.8
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.6e-37 158.7 273 35.5
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 2.5e-36 156.8 207 40.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.3e-36 156.4 185 43.2
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.5e-36 154.8 167 47.3
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.2e-35 154.5 166 47.6
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.0e-34 151.4 255 36.1
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.0e-34 151.4 227 39.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 5.2e-34 149.1 237 41.4
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-30 137.5 166 48.2
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.7e-29 134.0 118 55.9
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.1e-28 131.3 183 39.9
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-27 127.5 194 39.2
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.8e-26 124.0 222 36.0
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.3e-26 123.6 210 34.3
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 3.1e-26 123.2 285 30.5
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.1e-26 123.2 249 32.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.2e-26 122.5 231 36.4
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-24 117.9 155 40.0
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.3e-24 117.9 214 34.6
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 6.4e-24 115.5 116 50.0
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.6e-22 110.9 105 50.5
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 7.8e-22 108.6 148 41.2
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.9e-20 104.0 138 43.5
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.6e-19 99.8 197 35.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.8e-18 97.4 308 25.0
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.3e-18 97.1 224 29.9
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.7e-16 89.7 56 67.9
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.1e-15 86.3 62 59.7
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 2.7e-14 83.6 72 51.4
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 4.6e-14 82.8 133 36.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 2.3e-13 80.5 253 26.9
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 5.6e-12 75.9 62 54.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 5.6e-12 75.9 71 50.7
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.2e-11 72.4 87 47.1
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.8e-10 70.9 73 46.6
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.0e-10 69.7 233 24.9
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 4.0e-10 69.7 131 38.2
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.4e-09 66.6 111 36.0
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-08 62.0 148 28.4
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.1e-07 59.7 58 50.0
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.2e-07 58.5 50 50.0


User provided reference genes

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