Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 6.4e-70 267.3 137 100.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 7.6e-55 217.2 138 79.0
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 7.6e-55 217.2 140 80.0
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.2e-54 215.7 141 78.7
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 2.9e-54 215.3 138 80.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.9e-54 215.3 138 81.2
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.2e-53 211.8 141 76.6
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 75.0
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.5e-52 208.4 138 74.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.5e-52 208.4 138 75.4
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 6.0e-52 207.6 139 77.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.0e-51 206.8 139 74.1
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.3e-51 206.5 139 74.8
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.3e-51 206.5 140 75.7
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.8e-51 206.1 139 74.8
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.3e-51 205.7 139 74.8
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.0e-51 205.3 139 75.5
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.7
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.7
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.7
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.7
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.9e-51 204.9 139 77.7
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 5.1e-51 204.5 140 75.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 6.7e-51 204.1 140 74.3
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 8.7e-51 203.8 139 74.8
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 75.7
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.9e-50 202.6 140 75.7
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.3e-50 201.4 139 74.8
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 71.9
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 74.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 74.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 7.4e-50 200.7 140 72.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.4e-50 200.7 141 75.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 7.4e-50 200.7 141 75.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 9.7e-50 200.3 139 74.1
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 9.7e-50 200.3 141 74.5
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 9.7e-50 200.3 140 73.6
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.6e-49 199.5 141 73.0
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.6e-49 199.5 139 71.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.6e-49 199.5 140 74.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 1.6e-49 199.5 140 73.6
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.8e-49 198.7 140 72.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.8e-49 198.7 142 75.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 74.3
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 74.3
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 73.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 6.3e-49 197.6 138 76.1
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 6.3e-49 197.6 141 76.6
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 8.2e-49 197.2 141 76.6
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 8.2e-49 197.2 142 74.6
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 75.5
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 71.9
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 75.2
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 73.8
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.4e-48 196.4 138 73.2
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 75.2
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 3.1e-48 195.3 142 74.6
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 3.1e-48 195.3 142 74.6
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.1e-48 195.3 139 73.4
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 75.2
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 75.2
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 75.2
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 75.2
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 4.1e-48 194.9 140 72.9
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 4.1e-48 194.9 140 70.7
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 5.3e-48 194.5 141 75.2
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 5.3e-48 194.5 141 75.2
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 5.3e-48 194.5 140 71.4
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 5.3e-48 194.5 140 70.7
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 6.9e-48 194.1 142 73.9
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 6.9e-48 194.1 142 73.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 9.0e-48 193.7 142 73.9
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 9.0e-48 193.7 138 78.3
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 9.0e-48 193.7 133 75.9
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 70.4
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.2e-47 193.4 140 69.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.2e-47 193.4 138 70.3
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 70.2
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.5e-47 193.0 138 72.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.5e-47 193.0 137 72.3
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-47 192.6 140 70.0
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 73.9
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 73.9
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 73.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.0e-47 192.6 140 72.9
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.4e-47 191.8 139 71.9
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.5e-47 191.4 140 70.7
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.5e-47 191.4 137 71.5
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 5.9e-47 191.0 140 70.0
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 7.7e-47 190.7 140 69.3
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.7e-46 189.5 142 72.5
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.2e-46 189.1 140 68.6
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 138 71.0
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 69.3
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 138 69.6
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 6.5e-46 187.6 141 70.9
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 6.5e-46 187.6 141 70.9
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.1e-45 186.8 136 69.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.1e-45 186.8 141 73.0
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-45 186.4 140 71.4
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-45 186.4 140 71.4
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.9e-45 186.0 139 69.8
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 72.1
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.9e-45 186.0 140 69.3
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.5e-45 185.7 138 69.6
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.5e-45 185.7 139 67.6
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.2e-45 185.3 155 65.8
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 3.2e-45 185.3 140 67.1
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 4.2e-45 184.9 139 71.2
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 5.5e-45 184.5 139 68.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 7.2e-45 184.1 133 75.2
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 7.2e-45 184.1 138 67.4
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 9.4e-45 183.7 134 72.4
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.2e-44 183.3 140 69.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.6e-44 183.0 133 71.4
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.6e-44 183.0 138 66.7
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 3.6e-44 181.8 140 70.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 3.6e-44 181.8 142 66.2
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.6e-44 181.4 145 69.0
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 7.9e-44 180.6 137 70.1
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.0e-43 180.3 136 70.6
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.4e-43 179.9 137 67.2
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.3e-43 179.1 140 68.6
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.1e-42 176.8 140 67.1
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.5e-42 176.4 139 66.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 66.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 66.4
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.3e-42 174.9 144 66.0
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 4.3e-42 174.9 138 63.8
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.3e-41 173.3 137 68.6
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 6.3e-41 171.0 133 64.7
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.1e-40 170.2 133 65.4
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.8e-40 169.5 139 66.2
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.1e-40 168.7 138 63.0
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.9e-38 162.2 140 62.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 3.8e-38 161.8 137 65.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 7.2e-37 157.5 109 71.6
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.1e-34 150.2 88 84.1
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.1e-34 150.2 137 55.5
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.3e-34 148.7 91 81.3
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 5.7e-34 147.9 139 56.8
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 5.7e-34 147.9 152 56.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.2e-33 146.0 158 53.8
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.7e-33 145.2 137 54.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 8.2e-33 144.1 147 55.8
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.5e-31 139.8 137 54.7
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.5e-31 138.7 140 57.9
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 4.5e-31 138.3 139 56.8
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.0e-30 134.8 115 63.5
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.2e-29 132.1 148 54.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.7e-28 129.0 139 54.0
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.7e-28 129.0 133 55.6
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 4.7e-28 128.3 89 73.0
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 8.8e-27 124.0 117 56.4
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.2e-25 119.4 147 49.0
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.7e-25 118.6 135 50.4
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 8.2e-25 117.5 89 66.3
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.9e-21 106.3 89 65.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 6.1e-20 101.3 67 68.7
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.2e-19 98.2 52 84.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.3e-17 93.6 139 38.8
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.1e-16 89.0 80 56.2
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 4.1e-16 88.6 79 60.8
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.8e-14 82.0 72 61.1
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.5e-13 78.2 139 39.6


User provided reference genes

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