Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1811.6 915 100.0
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1472.2 949 78.1
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1436.4 942 77.3
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1255.0 933 67.7
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1220.3 933 66.1
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1212.6 933 66.2
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1211.1 933 66.1
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1187.9 942 63.8
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1170.6 963 62.1
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1146.7 942 61.5
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1145.2 941 61.6
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1127.5 941 61.6
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1124.0 938 61.5
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1121.3 935 61.7
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1110.5 935 60.9
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1108.2 934 61.3
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1097.0 931 60.3
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1094.7 934 60.7
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1094.0 940 59.3
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1092.4 946 59.4
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1092.0 936 60.0
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1092.0 931 60.4
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1080.5 937 59.0
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1079.3 938 58.8
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1079.3 943 58.2
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1076.6 938 58.6
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 4.4e-311 1071.2 942 58.2
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.9e-307 1058.5 939 58.4
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 9.2e-306 1053.5 940 57.6
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 4.6e-305 1051.2 950 57.1
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 3.9e-304 1048.1 950 56.7
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 8.6e-304 1047.0 943 57.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 1.5e-303 1046.2 952 56.6
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 5.6e-303 1044.3 951 57.2
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 2.1e-302 1042.3 951 57.0
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 1.1e-301 1040.0 954 57.4
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 4.0e-301 1038.1 948 56.3
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 5.2e-301 1037.7 944 56.5
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 5.2e-301 1037.7 955 56.2
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 6.9e-301 1037.3 938 57.2
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 1.2e-300 1036.6 944 56.9
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 2.6e-300 1035.4 952 56.6
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 2.6e-300 1035.4 951 55.0
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 7.6e-300 1033.9 939 56.9
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 2.9e-299 1031.9 940 56.3
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 6.4e-299 1030.8 935 56.0
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 9.3e-298 1026.9 944 56.7
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 4.6e-297 1024.6 992 55.2
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 1.9e-295 1019.2 953 54.8
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 4.3e-295 1018.1 939 56.3
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 2.6e-292 1008.8 938 56.4
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 4.5e-292 1008.1 939 56.3
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 9.9e-292 1006.9 946 55.7
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.4e-290 1003.0 947 55.3
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 4.2e-290 1001.5 936 55.8
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 1.0e-288 996.9 918 54.8
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 1.8e-288 996.1 948 53.7
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 2.5e-287 992.3 946 53.9
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 3.3e-287 991.9 845 59.8
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 4.8e-286 988.0 945 53.7
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 4.8e-286 988.0 941 56.0
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 1.8e-285 986.1 948 53.8
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 3.1e-285 985.3 949 54.4
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 2.6e-284 982.2 943 53.1
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 5.8e-284 981.1 920 54.1
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 8.4e-283 977.2 966 52.0
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 7.1e-282 974.2 936 53.8
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 1.2e-281 973.4 944 52.8
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 3.0e-280 968.8 948 52.8
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 1.1e-279 966.8 947 52.1
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 1.1e-279 966.8 947 52.1
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 5.6e-279 964.5 940 54.9
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 2.1e-278 962.6 944 53.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 3.7e-278 961.8 939 53.7
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.2e-276 956.8 906 56.4
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 5.8e-276 954.5 940 54.4
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 2.2e-275 952.6 1000 51.5
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.2e-274 948.7 960 51.9
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 5.5e-274 948.0 932 55.5
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.3e-271 938.3 828 57.6
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 2.6e-268 929.1 949 51.2
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 1.0e-264 917.1 942 51.5
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.6e-262 909.8 695 65.6
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.2e-257 893.6 730 61.2
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.0e-252 876.3 803 55.4
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.4e-252 875.5 921 50.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-248 863.2 685 65.0
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 2.0e-244 849.7 817 51.8
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.2e-236 823.9 935 47.3
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 8.3e-230 801.2 737 56.3
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 8.3e-222 774.6 934 45.9
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 8.9e-208 728.0 949 43.4
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 2.9e-198 696.4 653 56.4
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 6.9e-184 648.7 981 40.4
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 2.1e-172 610.5 941 38.3
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 3.3e-170 603.2 496 59.1
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.2e-167 594.7 943 38.1
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.0e-134 485.3 733 39.8
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.3e-131 474.2 400 61.2
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 3.3e-130 470.3 421 55.8
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 3.8e-126 456.8 885 32.8
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.8e-123 445.7 425 57.2
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 6.3e-121 439.5 883 31.9
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 4.5e-119 433.3 905 32.2
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.7e-113 414.8 464 51.7
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-112 411.4 394 58.6
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 4.0e-99 367.1 452 46.9
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-91 340.1 256 65.6
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.6e-63 247.3 194 62.4
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 8.2e-36 156.8 468 29.3
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-35 156.4 139 55.4
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 9.1e-27 126.7 311 33.8
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.1e-27 126.7 311 33.4
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-26 125.6 316 30.7
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 4.5e-26 124.4 135 54.1
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 5.9e-26 124.0 116 56.9
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.0e-25 120.9 254 35.8
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 8.2e-20 103.6 85 55.3
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-18 99.0 68 70.6
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.1e-15 89.0 139 40.3
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.0e-13 82.4 61 72.1
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.3e-13 81.6 61 73.8
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 1.8e-11 75.9 49 71.4
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-11 75.1 131 39.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 9.1e-11 73.6 53 58.5
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.6e-10 72.8 53 56.6
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.7e-09 69.3 69 46.4
Pp3c19_1150 Physcomitrium patens HOM05D004953 ORTHO05D006193 6.5e-09 67.4 82 41.5
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.2e-08 65.1 80 42.5
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.2e-08 64.7 103 45.6
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-07 62.8 40 67.5
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 1.6e-07 62.8 38 71.1
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 5.2e-06 57.8 42 54.8
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 6.8e-06 57.4 171 29.2
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.8e-06 57.0 60 56.7


User provided reference genes

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