Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 8.8e-199 696.8 367 100.0
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.5e-137 493.4 369 76.4
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 6.5e-69 265.4 374 50.5
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.2e-68 262.7 367 51.5
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.6e-67 260.8 382 48.4
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 3.4e-65 253.1 369 46.3
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 4.4e-65 252.7 308 52.3
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 5.7e-65 252.3 377 46.2
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.3e-64 251.1 360 48.9
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 6.3e-64 248.8 360 47.8
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.8e-63 247.3 393 44.3
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.4e-63 246.9 383 45.4
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.1e-63 246.5 394 43.4
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.4e-63 245.7 383 45.4
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 9.2e-63 245.0 379 49.6
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.6e-62 244.2 390 45.4
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 4.5e-62 242.7 379 45.9
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.0e-61 241.5 372 45.4
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.3e-61 241.1 396 45.2
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.3e-61 241.1 388 43.8
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-61 241.1 384 44.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.3e-61 240.4 374 46.5
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.8e-61 239.6 368 47.0
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 5.6e-60 235.7 396 44.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.6e-59 234.2 330 51.2
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 2.8e-59 233.4 375 48.0
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.7e-59 232.6 385 44.7
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.4e-58 231.1 350 48.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.4e-58 231.1 394 44.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 6.8e-58 228.8 402 43.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.5e-57 227.6 393 43.8
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.4e-57 226.1 388 44.8
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.5e-57 225.3 385 43.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 9.8e-57 224.9 402 42.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.3e-56 224.6 384 45.3
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.9e-56 223.4 387 44.4
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.7e-56 223.0 395 42.5
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.1e-55 221.5 397 44.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.1e-55 221.5 379 46.2
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.4e-55 220.3 376 43.6
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.1e-55 219.5 387 43.4
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.1e-55 219.5 394 43.7
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 9.2e-55 218.4 386 41.7
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.7e-53 214.2 321 46.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 2.3e-53 213.8 407 41.8
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.3e-53 213.8 374 42.5
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.0e-53 212.6 370 45.1
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.1e-52 211.5 377 43.5
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-52 211.1 376 43.4
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.9e-52 210.7 375 41.9
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.9e-52 210.7 387 44.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.5e-52 210.3 375 42.7
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.3e-52 209.9 401 42.4
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 3.3e-52 209.9 413 41.2
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 4.3e-52 209.5 376 43.9
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 7.3e-52 208.8 426 40.1
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 9.5e-52 208.4 399 41.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.2e-51 208.0 375 41.9
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.6e-51 207.6 378 42.9
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.1e-51 207.2 376 43.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.1e-51 207.2 379 43.0
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 4.7e-51 206.1 325 44.3
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 8.0e-51 205.3 379 41.7
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-50 204.9 391 41.4
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.4e-50 204.5 312 45.2
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.2e-49 201.4 398 41.7
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.5e-49 201.1 323 44.6
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.4e-49 199.9 413 40.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 4.4e-49 199.5 373 41.6
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.8e-49 199.1 381 42.8
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.8e-49 199.1 381 42.8
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.8e-49 199.1 381 42.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.5e-49 198.7 388 42.5
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.2e-48 197.2 371 42.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.9e-48 196.8 323 45.5
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 3.7e-48 196.4 324 43.8
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 4.9e-48 196.1 371 42.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 8.3e-48 195.3 385 42.6
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.9e-47 194.1 373 41.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.9e-47 194.1 322 45.7
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.4e-47 193.7 388 40.7
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-46 191.0 376 42.8
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.6e-46 191.0 376 42.8
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.0e-46 190.7 407 39.3
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.8e-46 188.7 340 44.1
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.3e-45 188.0 334 42.8
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 6.6e-45 185.7 410 38.8
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.5e-44 184.5 408 40.0
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.3e-44 183.3 395 40.0
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.6e-44 182.6 217 53.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 5.6e-44 182.6 388 38.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 7.3e-44 182.2 367 42.2
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.8e-43 180.3 422 39.6
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.8e-43 180.3 406 40.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.8e-43 180.3 399 39.6
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.7e-43 179.5 405 40.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 6.2e-43 179.1 370 41.9
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 6.2e-43 179.1 321 42.7
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.1e-42 178.3 397 38.8
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.1e-42 176.8 404 38.6
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.1e-42 176.8 359 39.0
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.5e-41 174.5 363 39.9
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.5e-41 174.5 322 42.9
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.5e-41 174.5 395 40.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.0e-41 174.1 341 41.9
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.6e-41 173.7 377 41.1
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.6e-41 173.7 377 41.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.6e-41 173.7 391 39.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 4.4e-41 172.9 379 40.9
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 4.4e-41 172.9 383 38.9
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 4.9e-40 169.5 384 38.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 3.2e-39 166.8 381 40.2
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.2e-39 166.8 440 36.4
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 7.1e-39 165.6 409 38.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-38 164.5 360 41.4
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.6e-38 164.5 360 41.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.5e-38 163.3 407 38.3
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.3e-37 161.4 190 55.3
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.7e-37 161.0 382 37.4
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.3e-37 160.6 370 39.2
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 8.6e-37 158.7 371 39.6
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.5e-36 157.9 395 37.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.5e-36 157.9 187 55.6
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-36 157.9 318 42.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.2e-35 154.8 408 34.1
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.4e-32 142.5 412 35.4
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 7.1e-31 139.0 339 38.6
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.6e-30 136.3 267 41.9
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.7e-29 134.4 371 33.7
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.5e-28 131.3 234 45.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.5e-28 131.3 357 36.1
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 4.4e-25 119.8 363 37.2
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.8e-25 119.4 407 33.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 7.6e-25 119.0 359 34.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 3.5e-22 110.2 276 35.1
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.3e-21 108.2 272 36.4
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.2e-17 95.1 221 38.5
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 4.9e-16 89.7 306 34.0
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.9e-15 87.8 293 35.2
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 3.2e-15 87.0 129 43.4
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 5.6e-12 76.3 187 38.5
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 2.0e-09 67.8 270 28.5
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 7.9e-06 55.8 82 45.1
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 7.9e-06 55.8 233 27.0


User provided reference genes

Program Settings