Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1547.3 774 100.0
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1369.8 774 86.3
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1329.7 791 83.6
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1237.6 741 79.5
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1218.0 746 77.3
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1203.7 740 76.8
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1201.8 746 75.9
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1199.9 741 76.7
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1198.3 746 75.7
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1198.3 779 74.1
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 746 76.4
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 745 75.6
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 741 75.7
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 756 75.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1192.2 738 76.6
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1192.2 746 75.5
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1189.1 741 76.0
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 740 75.3
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1187.9 745 75.8
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1186.4 750 74.8
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1186.0 750 74.7
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 746 75.1
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1182.2 743 75.8
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1181.0 739 75.4
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1180.2 748 74.3
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1180.2 746 74.8
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1179.5 746 75.3
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1179.1 750 73.7
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1178.3 740 75.7
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1177.5 747 75.0
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1177.5 750 74.3
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1176.0 741 75.7
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1175.6 746 74.8
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 740 75.4
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1174.8 747 74.8
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1174.5 745 75.6
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 745 74.4
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 750 73.7
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1172.1 746 75.1
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 746 73.9
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1170.6 746 74.5
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 748 75.1
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1166.0 738 74.3
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1162.5 746 73.7
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1160.2 746 74.5
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 756 73.1
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 751 74.8
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1158.7 746 73.3
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1158.3 745 73.3
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1157.5 746 73.1
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1156.7 748 73.1
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1156.0 746 74.4
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1155.6 741 74.1
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1154.0 757 73.3
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1152.1 746 73.6
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1151.7 746 73.6
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1151.7 738 73.8
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1150.2 740 72.8
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1136.7 743 72.9
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 740 73.0
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 746 72.5
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1135.6 746 72.3
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1135.6 768 70.7
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1132.5 746 72.3
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1132.5 746 72.4
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1130.9 746 72.1
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1130.5 747 72.3
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1130.5 747 72.4
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1129.4 746 72.7
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1129.0 746 72.4
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1126.3 746 71.6
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 758 71.9
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 745 71.5
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1123.6 755 71.4
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1117.8 765 72.0
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 772 70.7
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1116.7 740 72.0
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1104.4 802 66.5
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1085.5 741 69.1
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1085.5 687 76.3
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1075.5 695 73.5
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 5.3e-312 1073.9 698 73.2
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 2.3e-310 1068.5 684 75.0
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 8.9e-310 1066.6 749 70.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.7e-308 1061.2 729 70.4
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 1.4e-307 1059.3 793 66.1
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 2.4e-307 1058.5 740 70.8
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 1.6e-306 1055.8 738 70.1
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 5.6e-296 1020.8 684 71.8
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 5.8e-293 1010.7 838 61.9
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 9.3e-291 1003.4 662 73.6
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 8.1e-287 990.3 625 76.2
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 5.1e-273 944.5 749 59.5
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.1e-270 936.8 742 60.1
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 3.5e-266 921.8 746 58.2
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.4e-254 882.5 604 70.5
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.7e-250 869.0 634 65.8
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 1.3e-236 823.5 620 64.4
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 7.2e-235 817.8 690 61.6
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-222 775.8 677 55.4
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 5.8e-208 728.4 522 67.4
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.1e-163 581.3 790 41.4
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 9.1e-145 518.5 354 67.2
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.4e-142 511.1 601 49.1
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 8.2e-122 442.2 278 74.1
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 4.7e-93 346.7 262 63.4
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.6e-87 325.9 289 60.2
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.4e-73 282.0 225 63.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 3.3e-70 270.8 254 56.3
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.5e-54 218.0 146 69.9
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 5.3e-44 183.7 118 72.9
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.1e-40 171.8 125 64.8
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 2.7e-40 171.4 137 58.4
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 5.7e-38 163.7 87 79.3
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 3.8e-34 151.0 92 79.3
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 3.8e-26 124.4 164 45.1
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 4.7e-24 117.5 107 48.6
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.2e-19 102.8 109 49.5
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.8e-15 89.0 56 76.8
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 3.9e-15 87.8 58 72.4
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 9.1e-12 76.6 43 79.1
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 2.6e-11 75.1 44 75.0
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.2e-08 66.2 40 80.0
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.8e-07 62.4 37 78.4


User provided reference genes

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