Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.5e-99 364.8 207 100.0
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 3.0e-55 219.2 223 70.0
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 2.0e-54 216.5 209 70.8
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 4.9e-45 185.3 197 61.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 5.4e-44 181.8 197 59.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.0e-43 179.9 190 61.1
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.5e-43 179.1 210 57.1
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.5e-43 179.1 159 66.0
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 5.9e-43 178.3 198 59.1
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.0e-42 177.6 170 61.8
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.7e-42 176.8 208 57.7
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 5.0e-42 175.3 163 60.7
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.1e-41 174.1 171 59.1
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.9e-41 173.3 183 57.4
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.9e-41 173.3 201 57.2
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 4.3e-41 172.2 204 56.9
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 5.6e-41 171.8 208 54.8
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 9.5e-41 171.0 208 56.2
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 9.5e-41 171.0 202 56.4
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 9.5e-41 171.0 198 53.5
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.8e-40 169.5 207 55.1
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.6e-40 169.1 187 51.3
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 4.7e-40 168.7 198 49.5
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.1e-40 168.3 191 58.1
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.0e-39 167.5 174 63.2
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.8e-39 166.8 166 63.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.8e-39 166.8 166 63.3
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.8e-39 166.8 137 75.2
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 5.2e-39 165.2 203 58.1
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 8.9e-39 164.5 203 56.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.9e-39 164.5 205 53.7
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.2e-38 164.1 182 52.2
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.0e-38 163.3 172 61.6
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.6e-38 162.9 208 53.4
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 3.4e-38 162.5 166 58.4
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 4.4e-38 162.2 209 54.1
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.4e-38 162.2 208 53.4
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 5.8e-38 161.8 165 60.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 9.8e-38 161.0 163 61.3
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.3e-37 160.6 205 53.2
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.3e-37 160.6 213 53.5
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.3e-37 160.6 213 54.0
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.7e-37 160.2 200 55.5
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.2e-37 159.8 138 68.1
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.9e-37 159.5 108 72.2
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.9e-37 159.5 159 60.4
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.9e-37 159.5 193 53.9
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.7e-37 159.1 200 52.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.7e-37 159.1 202 53.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 3.7e-37 159.1 208 53.4
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.7e-37 159.1 171 59.6
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 4.9e-37 158.7 141 67.4
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 6.4e-37 158.3 209 54.1
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 8.3e-37 157.9 200 52.5
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.1e-36 157.5 207 53.1
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.1e-36 157.5 200 52.5
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.4e-36 157.1 142 67.6
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.4e-36 157.1 206 53.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.4e-36 157.1 164 58.5
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.2e-36 156.0 108 72.2
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 4.1e-36 155.6 209 49.8
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 5.4e-36 155.2 211 54.5
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 7.0e-36 154.8 209 52.6
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 9.2e-36 154.5 208 51.4
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 9.2e-36 154.5 204 54.9
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.0e-35 153.3 137 62.0
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 2.7e-35 152.9 197 52.3
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 3.5e-35 152.5 168 57.7
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.5e-35 152.5 206 47.1
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 4.6e-35 152.1 225 52.0
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 6.0e-35 151.8 110 68.2
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.0e-35 151.8 190 54.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.7e-34 150.2 206 52.4
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 3.0e-34 149.4 108 66.7
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 3.0e-34 149.4 165 56.4
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.5e-33 147.1 208 50.0
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.5e-33 146.4 108 63.9
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 6.2e-32 141.7 157 51.0
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.4e-31 140.6 108 65.7
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.3e-31 139.8 103 64.1
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.9e-29 132.1 96 67.7
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.1e-28 131.0 276 42.0
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 7.8e-27 124.8 91 67.0
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.3e-26 124.0 205 45.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.5e-25 120.6 206 47.6
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 5.6e-25 118.6 74 81.1
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 6.2e-24 115.2 73 79.5
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.0e-23 112.5 71 71.8
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 1.2e-22 110.9 277 37.9
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.0e-22 110.2 73 69.9
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.7e-21 107.1 107 56.1
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.2e-21 106.7 107 54.2
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 6.4e-21 105.1 169 51.5
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 6.4e-21 105.1 107 53.3
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 6.4e-21 105.1 107 53.3
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 8.3e-21 104.8 107 54.2
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 8.3e-21 104.8 106 55.7
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 4.1e-20 102.4 107 52.3
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.4e-20 102.1 85 62.4
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 7.1e-20 101.7 106 52.8
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 7.1e-20 101.7 115 67.8
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.2e-19 100.9 107 52.3
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.2e-19 100.9 85 61.2
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.6e-19 100.5 85 61.2
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.6e-19 99.0 156 52.6
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 6.0e-19 98.6 60 81.7
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.0e-18 97.8 100 53.0
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.3e-18 97.4 159 40.3
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.3e-18 97.4 108 50.0
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.3e-18 97.4 85 60.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 2.3e-18 96.7 85 56.5
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.3e-18 96.7 85 57.6
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.3e-18 96.7 85 57.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.3e-18 96.7 86 57.0
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.9e-18 95.9 85 56.5
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 5.1e-18 95.5 85 57.6
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.6e-18 95.1 107 48.6
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 8.6e-18 94.7 85 55.3
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.1e-17 94.4 83 55.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.9e-17 93.6 85 55.3
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 2.5e-17 93.2 85 57.6
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-17 92.8 86 54.7
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 4.3e-17 92.4 85 57.6
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.3e-17 92.4 155 38.1
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 5.6e-17 92.0 86 53.5
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 5.6e-17 92.0 86 53.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 5.6e-17 92.0 103 45.6
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 7.3e-17 91.7 85 54.1
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.2e-16 90.9 86 53.5
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-16 90.9 86 53.5
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.2e-16 90.9 85 55.3
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.2e-16 90.9 85 50.6
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 2.1e-16 90.1 85 51.8
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.6e-16 89.4 177 41.2
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.6e-16 89.4 90 51.1
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.6e-16 89.4 178 34.8
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 4.7e-16 89.0 145 38.6
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 8.1e-16 88.2 90 51.1
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.1e-15 87.8 59 71.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.4e-15 87.4 85 51.8
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 1.4e-15 87.4 84 54.8
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.4e-15 87.4 84 54.8
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 1.8e-15 87.0 88 52.3
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.8e-15 87.0 85 54.1
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.0e-15 85.9 85 50.6
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.0e-15 85.9 85 50.6
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 6.8e-15 85.1 188 43.6
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.2e-14 84.3 197 36.0
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.2e-14 84.3 129 51.9
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.0e-14 83.6 85 48.2
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.4e-14 82.8 107 43.9
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 4.4e-14 82.4 85 52.9
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.7e-13 80.5 74 58.1
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 3.8e-13 79.3 101 62.4
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 1.4e-12 77.4 101 59.4
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 2.5e-09 66.6 86 39.5
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.5e-09 66.6 72 50.0
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 3.6e-08 62.8 85 30.6
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 4.7e-08 62.4 65 52.3
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.8e-07 60.5 61 54.1
Lsat_1_v5_gn_5_182360 Lactuca sativa HOM05D004087 ORTHO05D004787 1.8e-07 60.5 68 67.6
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 3.1e-07 59.7 50 64.0
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 9.0e-07 58.2 51 51.0
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.5e-06 57.4 137 45.3
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.5e-06 57.4 85 41.2
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.4e-06 55.8 51 56.9


User provided reference genes

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