Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 5.8e-102 374.4 212 100.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-79 300.4 212 83.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.8e-79 299.7 213 81.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-66 256.9 212 72.6
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.0e-66 255.8 212 72.6
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.8e-64 249.2 214 72.9
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 4.8e-64 248.4 210 71.0
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.4e-63 246.9 212 69.8
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.5e-62 243.4 212 67.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.4e-62 242.3 212 67.9
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.6e-62 241.1 214 71.0
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.0e-61 240.7 212 71.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.3e-61 240.4 214 67.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.0e-61 238.4 216 68.5
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 8.4e-61 237.7 211 70.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.1e-60 237.3 217 70.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.5e-60 236.1 212 69.3
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 4.2e-60 235.3 215 67.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 5.5e-60 235.0 200 71.0
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.5e-60 235.0 215 71.6
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 7.2e-60 234.6 226 64.6
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 9.3e-60 234.2 215 66.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.6e-59 233.4 229 65.1
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.6e-59 233.4 229 65.1
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 3.5e-59 232.3 224 65.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.6e-59 231.9 212 68.4
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 4.6e-59 231.9 212 68.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 7.9e-59 231.1 212 66.0
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.0e-58 230.7 214 66.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.8e-58 229.9 216 68.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 3.9e-58 228.8 212 67.9
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 5.1e-58 228.4 212 64.6
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 6.7e-58 228.0 213 69.5
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.7e-58 227.6 214 65.4
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.5e-57 226.9 237 65.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.5e-57 226.9 213 68.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.3e-57 225.7 213 68.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.3e-57 225.7 218 68.3
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 7.4e-57 224.6 224 66.1
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 7.4e-57 224.6 215 62.8
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 7.4e-57 224.6 229 63.3
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 9.7e-57 224.2 214 65.4
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.6e-56 223.4 237 64.6
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.6e-56 223.4 237 64.6
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.2e-56 223.0 233 63.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.8e-56 222.6 214 69.2
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 4.8e-56 221.9 193 67.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 8.2e-56 221.1 218 65.1
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.2e-56 221.1 230 59.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.1e-55 220.7 228 62.7
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.8e-55 219.9 234 62.0
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.8e-55 219.9 226 64.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.4e-55 219.5 217 64.5
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.4e-55 219.5 221 67.0
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.4e-55 219.5 212 62.3
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 4.1e-55 218.8 212 64.6
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.3e-55 218.4 208 68.3
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 6.9e-55 218.0 218 66.1
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.0e-55 217.6 231 60.2
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.0e-55 217.6 231 60.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-54 216.9 231 60.6
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.6e-54 216.1 126 88.1
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.4e-54 215.7 228 62.3
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-54 215.7 231 60.6
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.5e-54 215.3 231 61.9
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.9e-54 214.9 220 63.2
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.9e-54 214.9 126 88.1
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.0e-53 214.2 213 62.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-53 213.8 231 61.0
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.7e-53 213.4 214 59.8
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.7e-53 213.4 234 60.7
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.7e-53 213.4 212 66.5
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.9e-53 212.6 128 85.2
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.8e-53 212.2 127 87.4
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.8e-53 212.2 212 66.0
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.5e-52 209.5 223 62.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 3.2e-52 209.1 217 64.5
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 4.2e-52 208.8 212 61.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 4.2e-52 208.8 126 86.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 9.4e-52 207.6 212 66.5
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.2e-51 207.2 126 87.3
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.9e-51 204.5 241 56.0
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.3e-50 203.0 212 65.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.0e-50 202.6 220 63.2
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 8.8e-50 201.1 170 72.4
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.1e-49 200.7 255 56.9
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.1e-49 200.7 211 64.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.0e-49 199.9 212 60.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.5e-49 199.5 128 81.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 3.3e-49 199.1 209 64.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 4.3e-49 198.7 122 83.6
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 9.7e-49 197.6 212 63.2
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.7e-48 196.8 212 59.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 4.8e-48 195.3 215 63.3
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.1e-47 194.1 125 80.8
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.1e-47 194.1 200 59.5
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 9.1e-47 191.0 126 78.6
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-46 190.3 127 77.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.6e-46 189.5 192 66.7
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.5e-46 188.7 212 58.5
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 4.5e-46 188.7 127 76.4
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.0e-45 187.6 227 56.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.2e-45 186.4 203 56.2
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.9e-45 186.0 227 57.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 5.0e-45 185.3 244 54.9
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 3.2e-44 182.6 218 54.6
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 7.2e-44 181.4 125 74.4
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 7.2e-44 181.4 219 59.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-43 180.6 215 56.3
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 2.1e-43 179.9 213 58.7
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.7e-43 179.5 109 87.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.6e-43 179.1 106 89.6
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.0e-42 177.6 210 58.1
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.4e-42 177.2 210 57.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.8e-42 176.8 213 55.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 5.1e-42 175.3 207 51.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.4e-39 166.4 169 65.7
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.1e-39 165.6 213 52.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.6e-38 163.7 208 51.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.6e-38 162.9 125 71.2
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.2e-37 159.8 101 86.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.8e-37 159.1 195 56.9
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.8e-37 159.1 237 54.0
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 6.5e-37 158.3 95 82.1
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.2e-36 155.6 212 51.9
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-35 154.1 203 55.7
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.2e-35 154.1 128 65.6
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.1e-35 153.3 126 61.9
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.0e-35 151.4 109 76.1
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-34 150.6 128 64.1
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 4.0e-34 149.1 125 63.2
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-33 147.1 113 69.9
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 3.7e-32 142.5 169 59.2
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-31 140.6 215 44.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 4.1e-31 139.0 134 59.7
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.6e-30 137.1 197 48.7
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.6e-30 137.1 197 48.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 7.7e-30 134.8 218 45.0
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.0e-29 134.4 212 47.6
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 7.2e-28 128.3 115 65.2
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 9.4e-28 127.9 212 49.5
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.1e-27 126.7 225 45.8
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 6.1e-27 125.2 128 57.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 8.0e-27 124.8 103 59.2
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 2.0e-25 120.2 137 57.7
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 4.8e-24 115.5 149 55.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.4e-23 112.1 136 58.1
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.1e-23 111.3 82 74.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-20 103.6 79 68.4
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.3e-18 96.7 168 47.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.5e-14 82.8 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.0e-13 81.3 115 41.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.9e-12 77.0 65 63.1
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 4.7e-11 72.4 120 38.3
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.8e-10 70.5 94 47.9
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.2e-09 67.8 149 45.0
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.0e-09 67.0 108 53.7
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 5.7e-09 65.5 41 73.2
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 9.8e-09 64.7 116 52.6
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.9e-08 62.4 37 78.4
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-06 57.4 46 65.2
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.0e-06 57.0 107 42.1


User provided reference genes

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