Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.4e-181 638.6 313 100.0
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 4.7e-100 368.6 319 60.8
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 6.1e-100 368.2 453 48.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 5.6e-77 292.0 341 48.4
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.1e-75 286.2 328 51.2
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 5.2e-75 285.4 340 49.4
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.8e-75 285.0 320 50.6
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 3.7e-73 279.3 323 47.7
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.9e-72 276.9 312 50.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.4e-72 276.6 343 47.8
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.1e-72 275.8 332 48.2
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 4.1e-72 275.8 330 48.5
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.1e-71 273.5 351 46.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 2.7e-71 273.1 343 46.4
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.3e-70 270.8 378 44.4
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.9e-70 269.2 351 46.4
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 3.9e-70 269.2 363 45.7
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 5.1e-70 268.9 336 47.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 6.6e-70 268.5 340 48.8
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.6e-70 268.5 351 46.2
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.6e-70 268.1 333 49.2
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.6e-70 268.1 347 46.7
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.5e-69 267.3 342 46.5
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.5e-69 267.3 351 45.9
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.5e-69 267.3 342 46.8
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.3e-69 266.2 343 46.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.3e-69 266.2 333 48.9
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.3e-69 266.2 335 48.1
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.3e-69 265.8 335 48.1
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.2e-68 264.2 336 47.6
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 4.7e-68 262.3 343 45.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 6.2e-68 261.9 341 47.8
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.2e-68 261.9 402 42.0
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 8.1e-68 261.5 273 52.0
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.1e-67 261.2 339 44.8
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.4e-67 260.8 343 45.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 3.1e-67 259.6 325 45.5
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-66 257.7 339 44.5
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.0e-66 256.9 339 44.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.0e-66 256.9 338 46.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 4.4e-66 255.8 328 46.3
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 7.5e-66 255.0 356 46.1
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.9e-66 254.6 318 47.5
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.3e-65 254.2 345 45.5
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.9e-64 250.4 338 42.9
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.4e-64 250.0 324 46.0
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.2e-64 249.6 339 43.1
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 4.1e-64 249.2 340 45.3
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.2e-63 247.7 262 52.3
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.5e-63 246.1 340 43.2
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.6e-63 245.7 346 42.5
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 6.0e-63 245.4 338 43.8
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.0e-62 244.6 308 46.1
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-62 243.4 215 56.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 3.0e-62 243.0 308 46.4
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.0e-62 243.0 344 42.2
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.9e-62 242.7 329 45.6
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.9e-62 242.7 333 45.0
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.9e-62 242.7 365 41.9
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.1e-61 241.1 328 45.7
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.5e-61 240.0 334 43.7
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.5e-61 240.0 309 46.3
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 3.3e-61 239.6 333 45.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.3e-61 239.6 342 45.6
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.3e-61 239.2 317 46.4
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.2e-60 237.7 338 41.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.6e-60 237.3 324 44.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.8e-60 236.5 355 41.7
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 3.6e-60 236.1 309 46.0
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 4.7e-60 235.7 338 42.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.7e-60 235.7 344 41.9
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 6.2e-60 235.3 330 43.3
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 8.1e-60 235.0 340 41.2
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.4e-59 234.2 355 41.7
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.8e-59 233.8 329 43.8
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.1e-59 233.0 321 43.6
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 5.2e-59 232.3 349 40.4
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.2e-58 231.1 323 42.7
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.5e-58 230.7 332 42.8
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.0e-58 230.3 315 43.8
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 3.4e-58 229.6 343 41.4
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.6e-58 228.4 293 45.7
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.7e-57 227.3 314 44.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.7e-57 227.3 319 43.6
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.2e-57 226.9 316 44.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.9e-57 226.5 339 43.4
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 3.8e-57 226.1 354 42.7
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.4e-56 223.4 320 42.8
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 5.4e-56 222.2 330 41.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 5.4e-56 222.2 330 41.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 7.1e-56 221.9 347 42.9
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.1e-55 220.3 339 41.3
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 7.8e-55 218.4 332 41.9
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 7.8e-55 218.4 332 41.9
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 6.6e-54 215.3 321 41.7
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.5e-53 213.4 332 41.3
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 3.3e-53 213.0 254 46.9
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 4.3e-53 212.6 341 43.7
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 7.3e-53 211.8 289 44.3
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 3.6e-52 209.5 214 50.5
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.4e-50 202.6 368 38.9
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.7e-49 200.7 168 59.5
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.7e-49 200.7 228 46.9
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 2.2e-49 200.3 339 41.9
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 8.4e-49 198.4 313 38.3
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.2e-48 196.1 368 37.2
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 7.1e-48 195.3 318 38.1
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.7e-46 190.7 297 40.7
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 8.7e-46 188.3 233 44.2
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 8.7e-46 188.3 321 37.1
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.5e-45 187.6 338 38.2
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 8.1e-44 181.8 243 44.0
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 6.9e-43 178.7 204 46.6
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-42 177.9 204 46.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.2e-42 177.9 204 46.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-42 177.2 204 47.1
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.0e-42 177.2 204 46.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.6e-42 176.8 329 38.3
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 9.9e-42 174.9 240 42.9
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.0e-33 148.3 225 37.3
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 6.4e-33 145.6 189 44.4
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 7.1e-32 142.1 241 36.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 4.0e-27 126.3 241 32.8
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.0e-26 124.0 222 36.0
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.8e-25 119.8 222 35.6
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.1e-24 118.2 222 35.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 2.5e-24 117.1 216 40.3
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.5e-24 117.1 224 35.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.1e-23 114.0 218 33.5
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 4.6e-23 112.8 195 42.6
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.0e-22 111.7 171 42.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 9.7e-21 105.1 128 45.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 8.2e-20 102.1 98 49.0
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.7e-17 94.4 91 58.2
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.0e-14 85.1 99 44.4
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-14 84.3 63 58.7
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 3.9e-14 83.2 70 61.4
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 5.1e-14 82.8 194 32.5
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-12 78.2 61 55.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.2e-10 71.6 96 40.6
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 5.9e-10 69.3 65 58.5
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.7e-10 68.9 71 52.1
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-09 68.2 62 50.0
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-09 68.2 49 59.2
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-09 67.0 52 59.6
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.2e-08 62.4 53 52.8
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.7e-07 59.7 126 36.5


User provided reference genes

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