Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-153 546.6 311 100.0
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.1e-116 421.4 311 83.0
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 6.7e-107 391.3 290 81.4
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.4e-104 383.6 296 79.1
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.0e-99 365.9 307 67.8
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.5e-85 320.5 279 64.5
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 5.5e-85 318.5 279 61.6
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.1e-84 316.6 294 65.6
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.7e-84 316.2 294 65.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 8.0e-84 314.7 264 64.4
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 8.0e-84 314.7 262 66.4
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.0e-83 314.3 292 63.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.4e-83 313.9 288 60.8
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.8e-83 313.5 288 60.4
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 5.2e-83 312.0 306 61.8
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.4e-82 308.9 265 64.9
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 7.5e-82 308.1 280 60.0
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.2e-81 306.6 307 62.2
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 2.8e-81 306.2 306 60.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.8e-81 305.4 290 60.7
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.8e-80 303.5 263 65.0
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.4e-80 303.1 293 60.1
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.1e-80 302.4 288 60.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 9.1e-80 301.2 291 56.7
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-79 300.8 248 64.1
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.2e-79 300.8 290 60.3
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.6e-79 300.4 285 63.5
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.6e-79 300.4 288 60.1
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.0e-78 297.7 311 60.8
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.2e-78 296.6 296 57.8
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 5.0e-78 295.4 290 57.9
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 8.5e-78 294.7 265 64.9
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.5e-77 293.1 291 61.9
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.5e-77 293.1 291 61.9
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 4.2e-77 292.4 276 59.8
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 5.5e-77 292.0 264 62.1
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 7.2e-77 291.6 298 56.4
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.6e-76 290.4 289 60.6
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.6e-76 290.4 265 63.8
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 2.1e-76 290.0 291 60.5
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 2.1e-76 290.0 291 59.1
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 3.6e-76 289.3 293 60.8
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.0e-76 288.1 265 61.9
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 8.0e-76 288.1 291 57.0
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 8.0e-76 288.1 291 59.5
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-75 287.7 290 61.4
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.3e-75 286.6 296 59.8
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 3.0e-75 286.2 297 58.6
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 6.8e-75 285.0 288 62.2
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-74 284.3 265 64.2
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.6e-74 283.1 294 60.9
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 3.4e-74 282.7 266 63.5
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 4.4e-74 282.3 303 56.8
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 9.8e-74 281.2 293 56.3
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 9.8e-74 281.2 290 60.3
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 4.9e-73 278.9 262 63.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 8.3e-73 278.1 263 62.0
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.8e-72 276.9 263 60.8
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 3.1e-72 276.2 269 63.2
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.1e-72 276.2 291 55.7
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 7.0e-72 275.0 263 58.9
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 9.1e-72 274.6 292 60.6
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.2e-71 274.2 287 55.7
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.2e-71 274.2 264 61.0
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 2.0e-71 273.5 263 61.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 2.7e-71 273.1 269 62.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.7e-71 273.1 263 60.5
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 4.5e-71 272.3 291 56.7
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.0e-70 271.2 295 58.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.3e-70 270.8 261 57.9
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-70 270.0 290 57.2
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.3e-70 270.0 290 57.2
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.3e-70 270.0 290 57.2
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.9e-70 269.6 306 55.6
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 3.8e-70 269.2 263 60.8
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 5.0e-70 268.9 250 62.8
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.0e-70 268.9 263 60.1
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 5.0e-70 268.9 285 53.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.6e-70 268.1 270 57.4
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.5e-69 267.3 294 57.5
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 3.3e-69 266.2 267 61.8
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 3.3e-69 266.2 288 54.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 7.2e-69 265.0 288 54.2
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.6e-68 262.7 252 60.7
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.0e-67 261.2 289 55.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.4e-67 260.8 283 55.1
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.8e-67 260.4 221 64.7
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 3.0e-67 259.6 288 52.1
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-66 257.7 276 54.0
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.2e-66 257.7 288 54.2
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 2.0e-66 256.9 292 51.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.0e-66 256.9 248 60.1
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.7e-66 255.4 248 60.1
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.8e-66 254.6 248 60.1
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.3e-65 254.2 276 53.6
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-65 254.2 248 59.7
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 6.3e-65 251.9 303 51.2
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 8.3e-65 251.5 298 52.7
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 2.4e-64 250.0 283 53.0
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 3.2e-64 249.6 264 56.4
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 4.1e-64 249.2 292 53.1
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.1e-64 249.2 298 52.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.0e-64 248.4 262 61.1
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 7.0e-64 248.4 299 49.8
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.2e-63 247.7 310 55.8
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-63 247.7 241 58.9
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.6e-63 247.3 263 55.5
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.0e-63 246.9 296 56.1
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.7e-63 246.5 290 55.5
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.5e-63 246.1 295 56.3
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.6e-63 245.7 287 55.1
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.6e-63 245.7 258 62.4
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 5.9e-63 245.4 290 57.6
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.0e-62 244.6 290 55.2
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.0e-62 242.3 285 54.7
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 5.0e-62 242.3 292 49.7
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.8e-60 236.5 286 53.5
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 6.1e-60 235.3 262 53.4
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 6.1e-60 235.3 263 51.7
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.4e-59 234.2 287 51.9
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 5.2e-59 232.3 291 53.6
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 8.9e-59 231.5 307 48.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.4e-58 229.6 281 56.2
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 7.5e-58 228.4 259 60.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.4e-56 223.4 275 50.9
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 4.1e-56 222.6 289 49.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.0e-55 220.3 263 54.8
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.3e-54 217.6 216 61.1
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.2e-52 208.8 190 61.1
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.4e-51 207.6 283 44.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 7.5e-50 201.8 302 46.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 7.5e-50 201.8 266 47.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.2e-49 200.3 300 46.7
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.2e-48 196.4 298 48.3
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.6e-46 188.7 291 45.7
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.9e-45 187.2 278 43.9
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.3e-45 186.0 205 55.6
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.3e-43 180.3 156 67.9
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 4.0e-43 179.5 249 45.8
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 6.8e-43 178.7 261 43.7
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.6e-42 176.8 287 46.0
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.4e-40 171.0 119 65.5
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 5.1e-38 162.5 121 62.8
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.9e-37 160.6 109 76.1
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.9e-37 160.6 293 41.0
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.8e-36 156.8 106 67.0
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.7e-36 156.0 173 61.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.7e-36 156.0 173 61.8
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 4.0e-35 152.9 287 35.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 5.2e-35 152.5 170 58.2
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 3.4e-34 149.8 261 44.4
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.2e-33 147.1 146 53.4
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.4e-32 144.4 167 50.3
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 7.1e-32 142.1 251 38.2
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-31 141.4 312 36.9
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 3.0e-30 136.7 265 37.7
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.9e-30 136.3 189 52.9
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 5.1e-30 136.0 189 54.0
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 8.1e-28 128.6 129 50.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.4e-27 127.9 292 34.6
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.2e-24 116.7 80 70.0
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.0e-23 112.5 105 59.0
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 6.0e-23 112.5 279 35.1
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.5e-21 107.8 213 36.2
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.3e-21 105.5 70 71.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 4.0e-19 99.8 224 36.6
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.0e-18 97.4 68 66.2
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.4e-16 91.3 199 39.2
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.6e-15 86.3 75 60.0
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.3e-13 80.1 114 50.9
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.1e-12 77.4 48 75.0
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-11 74.7 155 41.9
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.4e-11 73.9 89 58.4
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.1e-11 73.6 94 51.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.9e-11 72.4 93 50.5
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.4e-08 64.7 250 27.6
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 7.1e-08 62.4 63 50.8
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 1.6e-07 61.2 59 57.6
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.0e-06 58.5 251 25.5


User provided reference genes

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