Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 3691.4 1897 100.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 2728.4 1902 74.3
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 2552.3 1919 70.1
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2244.5 1982 60.3
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2120.9 1982 57.9
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2102.8 1987 57.4
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2055.0 1998 56.1
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2017.7 1971 54.9
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2009.6 2053 52.6
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2008.4 1975 54.5
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1990.3 1992 54.2
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1968.7 1982 54.3
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1963.7 1981 53.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1955.3 1958 53.8
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1932.5 1979 53.1
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1925.6 1959 51.9
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1924.1 1981 52.5
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1922.1 1973 53.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1909.8 1964 52.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1903.6 1973 52.6
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1900.9 1974 52.3
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1899.0 2028 51.9
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1884.0 1969 51.9
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1882.8 1979 52.1
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1876.3 1969 51.9
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1874.8 1979 52.2
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1873.6 1975 51.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1871.7 1969 51.8
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1855.5 1968 51.2
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1832.4 2069 49.9
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1830.5 1980 50.3
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1818.9 1967 50.0
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1812.0 1966 50.3
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1810.0 1973 50.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1807.0 1981 50.3
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1805.8 2183 46.9
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1795.8 1980 50.3
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1793.5 1982 50.0
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1762.7 1975 50.4
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1760.7 1982 49.7
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1744.2 1970 49.3
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1740.7 1966 49.5
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1734.2 1973 49.0
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1734.2 2170 46.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1732.6 2099 47.6
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1732.2 1967 49.1
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1726.8 2015 47.5
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1719.1 1983 48.0
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1718.4 1975 48.7
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1714.9 2056 47.7
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1702.2 1978 48.1
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1699.5 1997 48.2
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1699.5 1977 48.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1696.4 1970 47.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1694.5 1971 47.4
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1691.8 1973 48.2
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1683.3 1810 50.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1682.5 1971 47.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1682.5 1782 51.1
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1674.8 1951 48.3
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1673.7 1971 47.3
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1671.8 2015 46.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1667.1 2069 46.6
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1662.9 1973 47.0
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1661.4 1972 46.9
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1661.0 1976 46.9
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1661.0 1958 47.7
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1660.2 1975 46.8
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1659.8 1965 47.2
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1577.8 1950 47.0
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1569.3 2006 44.6
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1552.0 1982 45.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1524.2 1945 44.7
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1518.1 1729 48.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1506.5 1987 43.7
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1449.1 1932 45.9
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1296.6 1386 52.2
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1263.1 2334 37.4
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1233.4 1473 48.5
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1218.4 1261 53.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1185.2 1385 47.7
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1142.9 1961 37.6
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1113.6 1357 47.1
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.1e-287 993.0 2069 32.3
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.8e-272 943.3 1233 44.2
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.1e-271 941.4 2068 31.0
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 7.1e-268 928.7 1214 44.1
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 4.0e-255 886.3 2084 30.6
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.7e-243 847.0 1084 44.7
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.3e-242 844.0 777 56.8
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.0e-221 775.4 591 68.2
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.7e-216 758.1 710 56.5
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 3.0e-210 737.3 656 59.8
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.1e-199 702.2 1313 37.0
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 5.0e-197 693.3 980 41.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.4e-191 674.5 1444 32.2
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.9e-181 640.6 849 41.7
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.1e-166 591.7 733 46.1
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 2.0e-161 575.1 479 62.4
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.7e-160 572.0 746 43.2
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.6e-158 565.5 736 44.4
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 3.3e-156 557.8 715 42.8
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 3.2e-135 488.0 2186 23.4
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.7e-118 431.8 775 39.0
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.8e-115 421.8 499 46.9
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.7e-115 421.4 538 45.2
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 3.1e-114 418.3 322 63.4
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.3e-108 398.3 745 34.9
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.9e-103 382.5 593 38.4
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.0e-97 362.5 728 34.8
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 5.9e-97 360.9 414 48.6
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.5e-92 346.3 604 37.9
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.1e-82 313.5 385 46.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.0e-77 295.0 640 33.8
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.5e-71 276.6 232 59.9
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-66 260.4 187 70.1
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.5e-55 223.4 467 30.8
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 6.4e-51 208.0 190 57.4
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 4.8e-46 191.8 201 49.8
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.6e-39 168.3 332 35.5
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.8e-38 166.0 100 79.0
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.5e-36 160.2 147 55.1
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.5e-36 158.7 399 31.1
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.6e-33 150.2 131 55.7
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.1e-33 149.8 585 25.1
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 9.0e-29 134.4 110 62.7
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.5e-28 132.1 153 48.4
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.2e-25 124.0 517 25.1
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.9e-23 116.7 138 47.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.3e-23 115.9 90 64.4
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.1e-22 113.2 92 57.6
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.8e-22 112.1 683 23.1
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.4e-21 110.5 99 54.5
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.8e-21 110.2 93 58.1
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 7.6e-20 104.8 112 48.2
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 2.2e-19 103.2 91 53.8
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 2.2e-19 103.2 124 46.8
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.4e-18 100.5 149 38.3
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.5e-18 99.8 114 45.6
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.6e-17 97.1 138 43.5
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 8.7e-16 91.3 59 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.5e-15 90.5 130 39.2
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.3e-14 87.4 112 42.9
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 2.8e-14 86.3 63 61.9
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 3.7e-14 85.9 51 68.6
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 2.4e-13 83.2 103 45.6
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.1e-13 82.8 197 32.0
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 4.1e-13 82.4 125 34.4
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 7.7e-12 78.2 71 50.7
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 6.5e-11 75.1 84 45.2
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-10 73.2 69 49.3
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 7.9e-09 68.2 146 34.9
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.4e-08 67.4 148 31.1
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 2.3e-08 66.6 158 33.5
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 6.7e-08 65.1 163 30.7
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 6.7e-08 65.1 96 45.8
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 6.7e-08 65.1 56 48.2
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 9.7e-07 61.2 71 43.7
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 4.8e-06 58.9 97 30.9


User provided reference genes

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