Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.2e-197 693.0 341 100.0
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 8.0e-178 627.1 347 88.5
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 4.1e-174 614.8 343 87.8
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 8.0e-162 573.9 348 81.6
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.8e-161 572.8 342 81.9
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 3.5e-157 558.5 323 81.7
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.3e-156 555.8 328 81.7
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 5.6e-155 551.2 324 81.2
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 7.3e-155 550.8 324 81.8
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 7.3e-155 550.8 328 80.5
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.6e-154 549.7 330 79.4
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.6e-154 549.7 329 80.5
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 2.1e-154 549.3 328 81.7
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 2.8e-154 548.9 319 82.1
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 3.6e-154 548.5 326 81.6
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 4.7e-154 548.1 347 77.8
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 6.1e-154 547.7 328 79.9
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 8.0e-154 547.4 327 80.7
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.0e-153 547.0 326 79.4
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.8e-153 546.2 352 77.0
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.8e-153 546.2 326 81.0
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 3.0e-153 545.4 318 82.4
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 4.0e-153 545.0 321 82.6
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 4.0e-153 545.0 348 77.9
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 4.0e-153 545.0 343 77.8
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 5.2e-153 544.7 328 80.2
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 6.8e-153 544.3 330 81.2
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 8.9e-153 543.9 327 80.4
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 1.2e-152 543.5 318 82.4
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 1.2e-152 543.5 318 83.0
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.0e-152 542.7 342 77.5
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 3.4e-152 542.0 327 79.8
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.4e-152 542.0 327 81.0
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 3.4e-152 542.0 326 81.0
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 4.4e-152 541.6 324 80.6
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 5.7e-152 541.2 344 77.0
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 7.5e-152 540.8 336 79.2
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 7.5e-152 540.8 336 79.2
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 9.8e-152 540.4 328 79.0
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 9.8e-152 540.4 318 82.1
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 1.3e-151 540.0 342 78.1
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.7e-151 539.7 330 80.6
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 1.7e-151 539.7 337 78.3
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 2.9e-151 538.9 320 82.5
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.7e-151 538.5 325 79.4
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.7e-151 538.5 338 77.8
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 8.3e-151 537.3 334 79.9
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.1e-150 537.0 342 77.2
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.4e-150 536.6 334 78.7
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 4.1e-150 535.0 332 78.3
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 9.2e-150 533.9 318 80.8
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.2e-149 533.5 328 79.3
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.7e-149 532.3 326 77.9
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 3.5e-149 531.9 327 78.3
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 3.5e-149 531.9 318 80.2
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 5.9e-149 531.2 331 77.9
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 7.8e-149 530.8 329 79.3
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 7.8e-149 530.8 330 80.6
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 3.0e-148 528.9 330 78.8
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.0e-148 528.9 331 77.0
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 3.0e-148 528.9 345 74.5
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 3.9e-148 528.5 318 79.6
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.0e-148 528.1 332 76.5
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 6.6e-148 527.7 342 76.6
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.1e-147 526.9 344 74.1
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.1e-147 526.9 337 75.7
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.5e-147 525.8 342 75.7
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 5.6e-147 524.6 324 77.2
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 2.3e-145 519.2 343 74.3
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 5.2e-145 518.1 326 79.4
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 3.4e-144 515.4 334 75.7
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 5.8e-144 514.6 343 73.5
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 7.5e-144 514.2 334 75.4
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.7e-143 513.1 360 71.4
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.6e-141 506.5 320 75.6
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.6e-141 506.5 323 75.9
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 2.7e-141 505.8 330 74.2
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.5e-141 505.4 328 74.4
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.3e-140 503.4 330 73.9
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 8.6e-140 500.7 333 73.6
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 2.5e-139 499.2 320 75.6
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 3.3e-139 498.8 327 74.3
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.3e-139 498.4 329 74.8
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 4.3e-139 498.4 326 73.0
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 7.3e-139 497.7 327 74.9
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.8e-138 495.7 296 81.4
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 2.8e-138 495.7 346 73.1
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.4e-137 493.4 328 71.6
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.3e-137 492.7 324 74.1
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 4.0e-137 491.9 331 73.4
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 6.8e-137 491.1 334 70.7
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 2.0e-136 489.6 298 79.2
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 5.8e-136 488.0 319 73.0
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.9e-134 483.0 291 81.1
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.1e-131 473.8 365 65.2
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 9.5e-131 470.7 294 77.6
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 2.3e-129 466.1 289 77.2
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 3.1e-129 465.7 292 77.4
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.6e-128 462.6 352 67.6
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 5.8e-128 461.5 295 78.6
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 4.9e-127 458.4 255 85.1
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 3.5e-125 452.2 319 73.0
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 7.8e-125 451.1 259 83.0
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.9e-124 448.7 259 82.6
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 6.2e-122 441.4 361 64.5
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 3.1e-121 439.1 260 80.0
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.5e-115 420.2 259 78.8
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.6e-109 400.2 227 83.7
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 5.1e-108 395.2 224 85.7
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 9.6e-107 391.0 345 56.8
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 7.1e-102 374.8 327 57.2
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 1.1e-99 367.5 304 59.5
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 3.7e-82 309.3 297 53.9
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 7.7e-80 301.6 212 66.5
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 2.2e-79 300.1 169 84.0
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 9.4e-78 294.7 281 58.4
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.2e-70 269.6 176 75.6
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 8.2e-66 255.0 217 58.1
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 3.2e-62 243.0 150 78.7
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 5.2e-60 235.7 209 60.8
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 3.8e-55 219.5 176 64.8
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 3.8e-55 219.5 326 39.3
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.5e-48 196.1 241 44.8
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 2.0e-43 180.6 365 35.1
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.6e-43 180.3 316 41.1
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 8.6e-39 165.2 114 71.1
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 7.3e-38 162.2 227 47.1
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.4e-35 153.3 113 66.4
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.7e-34 151.0 338 33.7
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 3.1e-20 103.6 57 86.0
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 4.4e-19 99.8 78 66.7
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 4.9e-18 96.3 250 33.6
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 1.2e-16 91.7 98 52.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 8.6e-15 85.5 45 88.9
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 1.8e-12 77.8 55 69.1
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.3e-07 61.6 32 81.2
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 7.3e-06 55.8 36 72.2


User provided reference genes

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