Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4907 Erigeron canadensis HOM05D001943 ORTHO05D001969 1.2e-29 133.3 60 100.0
AUR62006390 Chenopodium quinoa HOM05D001943 ORTHO05D001969 6.3e-15 84.3 46 80.4
AUR62029730 Chenopodium quinoa HOM05D001943 ORTHO05D001969 6.3e-15 84.3 46 80.4
Hund04789 Selenicereus undatus HOM05D001943 ORTHO05D001969 6.3e-15 84.3 46 80.4
Peaxi162Scf00037g01127 Petunia axillaris HOM05D001943 ORTHO05D001969 1.4e-14 83.2 44 84.1
TAR375G0423 Trochodendron aralioides HOM05D001943 ORTHO05D001969 3.1e-14 82.0 46 82.6
Actinidia20149 Actinidia chinensis HOM05D001943 ORTHO05D001969 4.1e-14 81.6 46 82.6
HanXRQChr12g0381091 Helianthus annuus HOM05D001943 ORTHO05D001969 4.1e-14 81.6 42 85.7
EL10Ac3g05416 Beta vulgaris HOM05D001943 ORTHO05D001969 6.9e-14 80.9 45 80.0
CDE11G0325 Ceratophyllum demersum HOM05D001943 ORTHO05D001969 9.0e-14 80.5 46 80.4
TAR629G1252 Trochodendron aralioides HOM05D001943 ORTHO05D001969 9.0e-14 80.5 44 84.1
unitig_736.g22784 Utricularia gibba HOM05D001943 ORTHO05D001969 9.0e-14 80.5 43 83.7
GSVIVG01019409001 Vitis vinifera HOM05D001943 ORTHO05D001969 9.0e-14 80.5 44 84.1
Ah.01g006050 Amaranthus hybridus HOM05D001943 ORTHO05D001969 1.2e-13 80.1 43 83.7
Solyc12g096540.2 Solanum lycopersicum HOM05D001943 ORTHO05D001969 1.5e-13 79.7 42 85.7
Sopen12g032370 Solanum pennellii HOM05D001943 ORTHO05D001969 1.5e-13 79.7 42 85.7
PGSC0003DMG402029274 Solanum tuberosum HOM05D001943 ORTHO05D001969 1.5e-13 79.7 42 85.7
Dinv43853 Davidia involucrata HOM05D001943 ORTHO05D001969 2.0e-13 79.3 46 80.4
Nitab4.5_0002420g0040 Nicotiana tabacum HOM05D001943 ORTHO05D001969 2.6e-13 79.0 43 81.4
ECA232G2946 Erigeron canadensis HOM05D001943 ORTHO05D001969 3.4e-13 78.6 41 87.8
SGA_v2.0_scaffold60G21114 Striga asiatica HOM05D001943 ORTHO05D001969 3.4e-13 78.6 46 82.6
TAR374G0444 Trochodendron aralioides HOM05D001943 ORTHO05D001969 3.4e-13 78.6 42 85.7
MBI04_g12219_MAGBIO Magnolia biondii HOM05D001943 ORTHO05D001969 4.5e-13 78.2 47 76.6
CDE09G1082 Ceratophyllum demersum HOM05D001943 ORTHO05D001969 1.0e-12 77.0 46 76.1
Lsat_1_v5_gn_8_6540 Lactuca sativa HOM05D001943 ORTHO05D001969 1.0e-12 77.0 40 87.5
Nitab4.5_0011818g0010 Nicotiana tabacum HOM05D001943 ORTHO05D001969 1.0e-12 77.0 42 81.0
Actinidia18540 Actinidia chinensis HOM05D001943 ORTHO05D001969 1.3e-12 76.6 46 76.1
Cc04_g13150 Coffea canephora HOM05D001943 ORTHO05D001969 2.2e-12 75.9 46 76.1
Lsat_1_v5_gn_2_131381 Lactuca sativa HOM05D001943 ORTHO05D001969 5.0e-12 74.7 40 85.0
ATR0584G225 Amborella trichopoda HOM05D001943 ORTHO05D001969 8.5e-12 73.9 44 75.0
MBI11_g02028_MAGBIO Magnolia biondii HOM05D001943 ORTHO05D001969 8.5e-12 73.9 47 76.6
Nn6g33282 Nelumbo nucifera HOM05D001943 ORTHO05D001969 8.5e-12 73.9 43 79.1
Lalb_Chr16g0377061 Lupinus albus HOM05D001943 ORTHO05D001969 1.1e-11 73.6 46 73.9
Sed0003913 Sechium edule HOM05D001943 ORTHO05D001969 1.4e-11 73.2 46 71.7
Potri.017G146700 Populus trichocarpa HOM05D001943 ORTHO05D001969 1.9e-11 72.8 46 78.3
CANSAT78G0633 Cannabis sativa HOM05D001943 ORTHO05D001969 2.5e-11 72.4 46 71.7
CANSAT78G2437 Cannabis sativa HOM05D001943 ORTHO05D001969 2.5e-11 72.4 46 71.7
Potri.005G040100 Populus trichocarpa HOM05D001943 ORTHO05D001969 4.2e-11 71.6 46 76.1
Zm00001eb140330 Zea mays HOM05D001943 ORTHO05D001969 4.2e-11 71.6 46 71.7
Medtr5g010025 Medicago truncatula HOM05D001943 ORTHO05D001969 5.5e-11 71.2 46 71.7
Ca_10945_v3 Cicer arietinum L. HOM05D001943 ORTHO05D001969 1.6e-10 69.7 46 69.6
ATR0661G578 Amborella trichopoda HOM05D001943 ORTHO05D001969 2.1e-10 69.3 43 74.4
Lalb_Chr09g0320841 Lupinus albus HOM05D001943 ORTHO05D001969 2.1e-10 69.3 46 69.6
SEGI_26230 Sequoiadendron giganteum HOM05D001943 ORTHO05D001969 2.7e-10 68.9 45 75.6
SEGI_40339 Sequoiadendron giganteum HOM05D001943 ORTHO05D001969 2.7e-10 68.9 45 75.6
CAN.G566.50 Capsicum annuum HOM05D001943 ORTHO05D001969 3.6e-10 68.6 42 76.2
Solyc01g099670.3 Solanum lycopersicum HOM05D001943 ORTHO05D001969 3.6e-10 68.6 42 76.2
TPR.G32091 Trifolium pratense HOM05D001943 ORTHO05D001969 6.1e-10 67.8 46 69.6
QL03p053636 Quercus lobata HOM05D001943 ORTHO05D001969 7.9e-10 67.4 45 68.9
Sopen01g043180 Solanum pennellii HOM05D001943 ORTHO05D001969 7.9e-10 67.4 42 73.8
PGSC0003DMG400024757 Solanum tuberosum HOM05D001943 ORTHO05D001969 7.9e-10 67.4 42 73.8
Peaxi162Scf00071g00529 Petunia axillaris HOM05D001943 ORTHO05D001969 1.0e-09 67.0 42 73.8
Ca_24540_v3 Cicer arietinum L. HOM05D001943 ORTHO05D001969 1.8e-09 66.2 44 68.2
Psat7g030640 Pisum sativum HOM05D001943 ORTHO05D001969 1.8e-09 66.2 46 67.4
Sc01g0009780 Simmondsia chinensis HOM05D001943 ORTHO05D001969 1.8e-09 66.2 46 69.6
Cc02_g02340 Coffea canephora HOM05D001943 ORTHO05D001969 2.3e-09 65.9 42 73.8
MELO3C005706.2 Cucumis melo HOM05D001943 ORTHO05D001969 2.3e-09 65.9 46 71.7
Atru.chr9.2127 Acer truncatum HOM05D001943 ORTHO05D001969 3.0e-09 65.5 46 69.6
Ciclev10022481m.g Citrus clementina HOM05D001943 ORTHO05D001969 3.0e-09 65.5 46 69.6
Glyma.01G222100 Glycine max HOM05D001943 ORTHO05D001969 3.0e-09 65.5 46 69.6
Glyma.11G021700 Glycine max HOM05D001943 ORTHO05D001969 3.0e-09 65.5 46 69.6
ClCG01G002390 Citrullus lanatus HOM05D001943 ORTHO05D001969 3.9e-09 65.1 46 71.7
CsaV3_5G002500 Cucumis sativus L. HOM05D001943 ORTHO05D001969 3.9e-09 65.1 46 71.7
HanXRQChr09g0265371 Helianthus annuus HOM05D001943 ORTHO05D001969 3.9e-09 65.1 44 70.5
PGR042G0410 Punica granatum HOM05D001943 ORTHO05D001969 3.9e-09 65.1 44 72.7
C01p21300 Brassica napus HOM05D001943 ORTHO05D001969 5.1e-09 64.7 44 75.0
BolC1t02053H Brassica oleracea HOM05D001943 ORTHO05D001969 5.1e-09 64.7 44 75.0
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 5.1e-09 64.7 44 68.2
Haze_08771 Corylus avellana HOM05D001943 ORTHO05D001969 6.7e-09 64.3 44 70.5
Nitab4.5_0003658g0040 Nicotiana tabacum HOM05D001943 ORTHO05D001969 6.7e-09 64.3 42 71.4
Nitab4.5_0004891g0040 Nicotiana tabacum HOM05D001943 ORTHO05D001969 6.7e-09 64.3 42 71.4
Psat0s5319g0040 Pisum sativum HOM05D001943 ORTHO05D001969 6.7e-09 64.3 48 66.7
Psat2g183200 Pisum sativum HOM05D001943 ORTHO05D001969 6.7e-09 64.3 48 66.7
Prupe.1G534700 Prunus persica HOM05D001943 ORTHO05D001969 6.7e-09 64.3 46 67.4
Prupe.1G534900 Prunus persica HOM05D001943 ORTHO05D001969 6.7e-09 64.3 46 67.4
Prupe.2G037600 Prunus persica HOM05D001943 ORTHO05D001969 6.7e-09 64.3 46 67.4
Hund14278 Selenicereus undatus HOM05D001943 ORTHO05D001969 6.7e-09 64.3 46 69.6
Sc19g0001220 Simmondsia chinensis HOM05D001943 ORTHO05D001969 8.8e-09 63.9 42 69.0
AUR62010741 Chenopodium quinoa HOM05D001943 ORTHO05D001969 1.1e-08 63.5 46 69.6
AUR62019744 Chenopodium quinoa HOM05D001943 ORTHO05D001969 1.1e-08 63.5 46 69.6
Eucgr.E00655 Eucalyptus grandis HOM05D001943 ORTHO05D001969 1.1e-08 63.5 46 65.2
QL12p031954 Quercus lobata HOM05D001943 ORTHO05D001969 1.1e-08 63.5 46 69.6
Sabra04G0048200 Salix brachista HOM05D001943 ORTHO05D001969 1.1e-08 63.5 46 69.6
BcaB01g04207 Brassica carinata HOM05D001943 ORTHO05D001969 1.5e-08 63.2 45 71.1
Haze_00434 Corylus avellana HOM05D001943 ORTHO05D001969 1.5e-08 63.2 44 70.5
DCAR_014521 Daucus carota HOM05D001943 ORTHO05D001969 1.5e-08 63.2 42 71.4
CSS0039436 Camellia sinensis var. sinensis HOM05D001943 ORTHO05D001969 1.9e-08 62.8 47 70.2
CiPaw.12G090000 Carya illinoinensis HOM05D001943 ORTHO05D001969 1.9e-08 62.8 46 67.4
Sed0016458 Sechium edule HOM05D001943 ORTHO05D001969 1.9e-08 62.8 46 67.4
Phvul.002G159600 Phaseolus vulgaris HOM05D001943 ORTHO05D001969 2.5e-08 62.4 46 67.4
PGR031G1843 Punica granatum HOM05D001943 ORTHO05D000005 3.3e-08 62.0 46 67.4
TPR.G6702 Trifolium pratense HOM05D001943 ORTHO05D001969 3.3e-08 62.0 46 65.2
Cpa.g.sc180.29 Carica papaya HOM05D001943 ORTHO05D001969 4.3e-08 61.6 44 75.0
Thecc.03G285600 Theobroma cacao HOM05D001943 ORTHO05D001969 4.3e-08 61.6 46 71.7
BcaB08g35620 Brassica carinata HOM05D001943 ORTHO05D001969 7.4e-08 60.8 45 68.9
BcaC04g20554 Brassica carinata HOM05D001943 ORTHO05D001969 7.4e-08 60.8 45 68.9
C09p42170 Brassica napus HOM05D001943 ORTHO05D001969 7.4e-08 60.8 45 68.9
BolC9t57097H Brassica oleracea HOM05D001943 ORTHO05D001969 7.4e-08 60.8 45 68.9
CiPaw.11G130600 Carya illinoinensis HOM05D001943 ORTHO05D001969 7.4e-08 60.8 46 65.2
COL.COLO4_08371 Corchorus olitorius HOM05D001943 ORTHO05D001969 9.7e-08 60.5 46 69.6
COL.COLO4_30307 Corchorus olitorius HOM05D001943 ORTHO05D001969 1.3e-07 60.1 44 65.9
Eucgr.D01820 Eucalyptus grandis HOM05D001943 ORTHO05D001969 1.3e-07 60.1 42 71.4
TPR.G24825 Trifolium pratense HOM05D001943 ORTHO05D001969 1.3e-07 60.1 46 63.0
TPR.G12911 Trifolium pratense HOM05D001943 ORTHO05D001969 2.2e-07 59.3 46 63.0
EL10Ac5g12827 Beta vulgaris HOM05D001943 ORTHO05D001969 2.8e-07 58.9 46 63.0
Duzib068G1231 Durio zibethinus HOM05D001943 ORTHO05D000005 3.7e-07 58.5 43 74.4
Gohir.A03G020700 Gossypium hirsutum HOM05D001943 ORTHO05D001969 3.7e-07 58.5 46 67.4
Gohir.D03G148000 Gossypium hirsutum HOM05D001943 ORTHO05D001969 3.7e-07 58.5 46 67.4
LjContig00312_ERROPOS870357g0005754 Lotus japonicus HOM05D001943 ORTHO05D001969 3.7e-07 58.5 46 67.4
Manes.02G017301 Manihot esculenta HOM05D001943 ORTHO05D001969 3.7e-07 58.5 46 65.2
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 3.7e-07 58.5 44 65.9
Duzib084G0619 Durio zibethinus HOM05D001943 ORTHO05D001969 4.8e-07 58.2 46 58.7
VMungo1215G0496 Vigna mungo HOM05D001943 ORTHO05D001969 6.3e-07 57.8 40 72.5
AL7G27300 Arabidopsis lyrata HOM05D001943 ORTHO05D001969 8.2e-07 57.4 44 65.9
TWI81G0712 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 8.2e-07 57.4 46 65.2
AT4G25740 Arabidopsis thaliana HOM05D001943 ORTHO05D001969 1.1e-06 57.0 46 63.0
Duzib084G0112 Durio zibethinus HOM05D001943 ORTHO05D001969 1.1e-06 57.0 44 68.2
Duzib205G0207 Durio zibethinus HOM05D001943 ORTHO05D000005 1.4e-06 56.6 44 68.2
Gohir.A08G114900 Gossypium hirsutum HOM05D001943 ORTHO05D001969 1.4e-06 56.6 44 68.2
Gohir.D08G135200 Gossypium hirsutum HOM05D001943 ORTHO05D001969 1.4e-06 56.6 44 68.2
Gohir.D09G186000 Gossypium hirsutum HOM05D001943 ORTHO05D001969 1.4e-06 56.6 44 68.2
Gorai.004G138400 Gossypium raimondii HOM05D001943 ORTHO05D001969 1.4e-06 56.6 44 68.2
Gorai.006G208700 Gossypium raimondii HOM05D001943 ORTHO05D001969 1.4e-06 56.6 44 68.2
Pp3c24_2340 Physcomitrium patens HOM05D001943 ORTHO05D001969 1.8e-06 56.2 46 63.0
BcaC01g06190 Brassica carinata HOM05D001943 ORTHO05D001969 2.4e-06 55.8 45 64.4
A03p15590 Brassica napus HOM05D001943 ORTHO05D001969 2.4e-06 55.8 45 64.4
A10p10190 Brassica napus HOM05D001943 ORTHO05D001969 2.4e-06 55.8 45 66.7
C03p18250 Brassica napus HOM05D001943 ORTHO05D001969 2.4e-06 55.8 45 64.4
BolC3t14223H Brassica oleracea HOM05D001943 ORTHO05D001969 2.4e-06 55.8 45 64.4
BraA03t10852Z Brassica rapa HOM05D001943 ORTHO05D001969 2.4e-06 55.8 45 64.4
BraA01t01654Z Brassica rapa HOM05D001943 ORTHO05D001969 3.1e-06 55.5 44 63.6
Sed0015730 Sechium edule HOM05D001943 ORTHO05D001969 3.1e-06 55.5 47 59.6
MSTRG.8709 Avicennia marina HOM05D001943 ORTHO05D001969 4.1e-06 55.1 42 64.3
BcaB02g07889 Brassica carinata HOM05D001943 ORTHO05D001969 6.9e-06 54.3 46 65.2
ECA238G2782 Erigeron canadensis HOM05D001943 ORTHO05D001969 6.9e-06 54.3 54 55.6
BcaB05g21970 Brassica carinata HOM05D001943 ORTHO05D001969 9.1e-06 53.9 45 62.2


User provided reference genes

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