Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.1e-46 189.5 89 100.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 7.4e-43 176.8 91 93.4
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 9.7e-43 176.4 89 92.1
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 2.2e-42 175.3 89 91.0
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.2e-42 175.3 89 92.1
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 2.8e-42 174.9 89 89.9
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 86 94.2
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 89.9
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 89.9
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.7e-42 174.5 89 89.9
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 4.8e-42 174.1 89 91.0
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 4.8e-42 174.1 91 91.2
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 4.8e-42 174.1 89 89.9
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.3e-42 173.7 89 92.1
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 6.3e-42 173.7 82 97.6
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.2e-42 173.3 85 92.9
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.2e-42 173.3 85 92.9
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 8.2e-42 173.3 89 89.9
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 89.9
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 88.8
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 88.8
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 88.8
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 88.8
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 88.8
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 88.8
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 89.9
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 89.9
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.4e-41 172.6 86 93.0
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.4e-41 172.6 89 88.8
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 1.4e-41 172.6 89 89.9
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.4e-41 172.6 89 88.8
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.4e-41 172.6 88 88.6
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.4e-41 172.6 89 91.0
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.8e-41 172.2 86 91.9
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 88.8
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 88.8
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 88.8
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 88.8
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 88.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 88.8
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 2.4e-41 171.8 89 87.6
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.4e-41 171.8 89 88.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.1e-41 171.4 89 88.8
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.1e-41 171.4 89 88.8
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 3.1e-41 171.4 89 88.8
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 4.1e-41 171.0 89 87.6
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 4.1e-41 171.0 89 89.9
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 5.3e-41 170.6 89 87.6
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 7.0e-41 170.2 89 87.6
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 7.0e-41 170.2 90 88.9
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 7.0e-41 170.2 88 88.6
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 9.1e-41 169.9 86 90.7
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 9.1e-41 169.9 89 87.6
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 9.1e-41 169.9 89 86.5
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.2e-40 169.5 86 91.9
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 1.2e-40 169.5 89 87.6
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.5e-40 169.1 89 87.6
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 2.0e-40 168.7 81 95.1
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 87.6
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 87.6
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 3.5e-40 167.9 88 85.2
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 3.5e-40 167.9 88 86.4
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 4.5e-40 167.5 85 89.4
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 87.6
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 4.5e-40 167.5 82 93.9
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 5.9e-40 167.2 89 87.6
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 5.9e-40 167.2 82 92.7
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 7.7e-40 166.8 89 86.5
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.7e-40 166.8 89 86.5
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.0e-39 166.4 87 87.4
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.0e-39 166.4 89 89.9
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 1.0e-39 166.4 82 92.7
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.3e-39 166.0 81 92.6
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.3e-39 166.0 81 92.6
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.3e-39 166.0 81 92.6
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.3e-39 166.0 81 92.6
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.3e-39 166.0 86 87.2
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.3e-39 166.0 81 92.6
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.7e-39 165.6 90 86.7
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 1.7e-39 165.6 85 89.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 2.2e-39 165.2 82 91.5
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.2e-39 165.2 87 86.2
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 2.9e-39 164.9 81 92.6
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.9e-39 164.9 89 85.4
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.9e-39 164.9 85 89.4
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.9e-39 164.9 82 93.9
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.9e-39 164.9 81 93.8
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 3.8e-39 164.5 82 91.5
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 3.8e-39 164.5 81 92.6
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 3.8e-39 164.5 89 85.4
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 3.8e-39 164.5 89 85.4
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.8e-39 164.5 89 83.1
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 3.8e-39 164.5 85 89.4
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 5.0e-39 164.1 89 87.6
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 5.0e-39 164.1 81 92.6
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.0e-39 164.1 85 87.1
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 5.0e-39 164.1 87 86.2
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.0e-39 164.1 82 91.5
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 6.5e-39 163.7 80 92.5
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 8.5e-39 163.3 89 84.3
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.1e-38 162.9 89 87.6
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.1e-38 162.9 80 92.5
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.4e-38 162.5 81 91.4
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.9e-38 162.2 86 89.5
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.9e-38 162.2 85 87.1
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 2.5e-38 161.8 82 89.0
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.2e-38 161.4 79 92.4
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 3.2e-38 161.4 81 91.4
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 3.2e-38 161.4 85 87.1
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 4.2e-38 161.0 85 85.9
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 4.2e-38 161.0 90 84.4
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 7.2e-38 160.2 82 87.8
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 9.4e-38 159.8 82 90.2
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 9.4e-38 159.8 82 90.2
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 9.4e-38 159.8 82 90.2
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.2e-37 159.5 87 86.2
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 1.6e-37 159.1 77 92.2
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.6e-37 159.1 82 89.0
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.6e-37 159.1 87 83.9
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.1e-37 158.7 86 84.9
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.7e-37 158.3 82 86.6
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.6e-37 157.9 97 78.4
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 4.7e-37 157.5 86 86.0
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 4.7e-37 157.5 89 80.9
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 6.1e-37 157.1 83 89.2
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 8.0e-37 156.8 88 84.1
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 1.0e-36 156.4 82 87.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 1.4e-36 156.0 75 93.3
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.3e-36 155.2 98 77.6
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.3e-36 155.2 78 91.0
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 3.0e-36 154.8 86 82.6
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.9e-36 154.5 80 90.0
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 3.9e-36 154.5 75 92.0
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.9e-36 154.5 78 87.2
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.5e-35 152.5 87 81.6
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 2.6e-35 151.8 75 92.0
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.6e-35 151.8 75 92.0
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.6e-35 151.8 86 80.2
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 3.3e-35 151.4 89 77.5
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 4.4e-35 151.0 81 84.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.7e-34 149.1 74 87.8
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 6.3e-34 147.1 83 84.3
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.1e-33 146.4 77 87.0
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 1.4e-33 146.0 74 86.5
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 1.4e-33 146.0 74 86.5
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 1.4e-33 146.0 74 86.5
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 1.4e-33 146.0 74 86.5
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 2.4e-33 145.2 82 78.0
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 8.5e-31 136.7 73 82.2
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 8.5e-31 136.7 78 76.9
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 9.4e-30 133.3 85 77.6
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.1e-29 132.1 91 69.2
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 6.1e-29 130.6 68 82.4
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.3e-28 128.6 64 89.1
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 3.0e-28 128.3 69 79.7
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.2e-27 126.3 70 81.4
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 2.4e-25 118.6 60 88.3
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.6e-24 115.9 60 83.3
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.0e-24 115.5 63 82.5
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 2.0e-19 99.0 55 83.6
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 4.4e-19 97.8 48 91.7
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 5.7e-19 97.4 77 57.1
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 1.4e-17 92.8 66 66.7
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 5.9e-16 87.4 54 72.2
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 5.0e-15 84.3 44 84.1
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 4.2e-14 81.3 46 78.3
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 9.5e-14 80.1 88 51.1
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.6e-13 78.2 47 78.7
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.7e-13 77.8 37 94.6
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.1e-13 77.4 38 86.8
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 2.3e-12 75.5 39 79.5
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 2.3e-12 75.5 39 79.5
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 4.0e-12 74.7 41 82.9
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.8e-12 73.9 67 58.2
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.9e-12 73.6 59 62.7
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.3e-10 69.7 38 86.8
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.8e-10 68.6 51 60.8
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 8.3e-10 67.0 38 81.6
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.9e-08 60.8 29 86.2
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.7e-07 59.3 38 78.9
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.3e-06 55.1 29 82.8


User provided reference genes

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