Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 2.4e-114 416.0 295 100.0
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 7.9e-65 251.5 225 68.0
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 2.1e-49 200.3 215 61.4
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 2.8e-46 189.9 201 61.7
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 1.1e-42 177.9 186 58.6
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 7.9e-41 171.8 189 57.7
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 2.5e-39 166.8 191 57.6
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 5.7e-39 165.6 187 55.1
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 7.4e-39 165.2 196 55.1
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 9.7e-39 164.9 180 57.2
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 9.7e-39 164.9 197 53.3
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 1.3e-38 164.5 170 60.0
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 1.7e-38 164.1 196 52.0
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 1.7e-38 164.1 212 54.7
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 2.8e-38 163.3 171 59.6
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 6.3e-38 162.2 170 57.6
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 1.4e-37 161.0 212 53.3
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 1.4e-37 161.0 142 62.7
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 1.8e-37 160.6 157 62.4
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 4.1e-37 159.5 187 57.2
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 4.1e-37 159.5 159 60.4
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 4.1e-37 159.5 232 47.8
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.3e-37 159.1 192 54.7
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.3e-37 159.1 173 57.2
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.3e-37 159.1 192 53.6
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.3e-37 159.1 192 53.6
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 5.3e-37 159.1 190 55.3
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 1.2e-36 157.9 198 50.5
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 1.5e-36 157.5 162 59.3
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 1.5e-36 157.5 192 53.6
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 1.5e-36 157.5 179 54.7
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 2.0e-36 157.1 187 55.6
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.6e-36 156.8 202 53.0
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.6e-36 156.8 202 53.0
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 4.5e-36 156.0 169 55.6
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 5.9e-36 155.6 172 55.8
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 5.9e-36 155.6 193 52.8
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 1.0e-35 154.8 186 57.5
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.3e-35 154.5 172 57.6
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 1.3e-35 154.5 221 51.6
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 1.7e-35 154.1 185 54.1
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 3.8e-35 152.9 172 56.4
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 5.0e-35 152.5 186 57.5
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 5.0e-35 152.5 184 55.4
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 6.5e-35 152.1 164 56.1
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 1.4e-34 151.0 171 56.1
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 1.4e-34 151.0 208 49.5
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.9e-34 150.6 235 46.8
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 2.5e-34 150.2 186 52.7
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.5e-34 150.2 179 53.1
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 3.2e-34 149.8 205 50.7
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.2e-34 149.4 210 47.1
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 5.5e-34 149.1 200 50.5
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 7.2e-34 148.7 196 50.0
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 7.2e-34 148.7 185 49.7
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.6e-33 147.5 227 49.3
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 2.7e-33 146.7 209 49.3
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 4.7e-33 146.0 147 59.2
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 6.1e-33 145.6 180 53.3
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 1.0e-32 144.8 173 57.2
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.8e-32 144.1 186 49.5
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 2.3e-32 143.7 211 51.2
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 2.3e-32 143.7 151 61.6
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 5.1e-32 142.5 212 46.2
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 6.7e-32 142.1 230 48.3
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 6.7e-32 142.1 193 51.3
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 8.8e-32 141.7 211 51.2
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 2.6e-31 140.2 212 51.4
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 2.6e-31 140.2 149 57.0
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 2.6e-31 140.2 205 51.2
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 3.3e-31 139.8 217 46.1
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 5.7e-31 139.0 213 49.8
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 5.7e-31 139.0 218 48.6
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 5.7e-31 139.0 182 50.0
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 7.4e-31 138.7 203 51.7
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 7.4e-31 138.7 203 51.7
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 9.7e-31 138.3 211 51.2
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 9.7e-31 138.3 184 51.6
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 9.7e-31 138.3 150 56.0
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 1.7e-30 137.5 213 49.8
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 2.8e-30 136.7 219 46.6
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 2.8e-30 136.7 185 48.6
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 4.8e-30 136.0 214 48.6
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 6.3e-30 135.6 212 50.9
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 6.3e-30 135.6 179 52.5
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 6.3e-30 135.6 213 47.9
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 8.2e-30 135.2 177 52.0
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 1.1e-29 134.8 194 51.5
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 2.4e-29 133.7 201 47.8
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 4.1e-29 132.9 200 50.5
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 5.3e-29 132.5 228 48.2
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 7.0e-29 132.1 197 49.7
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 2.0e-28 130.6 194 46.9
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 3.5e-28 129.8 189 49.2
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 4.5e-28 129.4 216 43.5
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 1.7e-27 127.5 195 47.2
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 3.8e-27 126.3 159 50.3
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 5.0e-27 125.9 129 59.7
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 8.5e-27 125.2 182 48.9
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 8.5e-27 125.2 199 48.2
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 8.5e-27 125.2 230 41.3
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 8.5e-27 125.2 112 61.6
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 2.5e-26 123.6 95 70.5
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 3.2e-26 123.2 115 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 5.5e-26 122.5 167 50.9
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 5.5e-26 122.5 196 45.4
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 7.2e-26 122.1 157 52.2
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 2.1e-25 120.6 154 52.6
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 6.1e-25 119.0 100 66.0
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 6.1e-25 119.0 192 46.9
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 8.0e-25 118.6 129 59.7
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 8.0e-25 118.6 151 53.0
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 1.4e-24 117.9 159 48.4
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 2.3e-24 117.1 185 45.4
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 3.0e-24 116.7 75 82.7
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 2.6e-23 113.6 208 42.3
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 4.4e-23 112.8 135 53.3
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 4.4e-23 112.8 135 53.3
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 7.4e-23 112.1 179 46.4
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 9.7e-23 111.7 118 57.6
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 1.3e-22 111.3 166 44.0
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 8.2e-22 108.6 71 80.3
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 1.4e-21 107.8 193 43.0
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 1.8e-21 107.5 189 42.9
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 1.8e-21 107.5 74 73.0
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 3.1e-21 106.7 168 46.4
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 9.1e-21 105.1 131 50.4
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 1.1e-18 98.2 80 63.8
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 2.3e-16 90.5 56 82.1
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 6.8e-16 89.0 77 57.1
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 2.4e-13 80.5 82 57.3
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.2e-11 73.9 71 59.2
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 8.5e-11 72.0 69 56.5
arahy.Tifrunner.gnm1.ann1.P8QCSH Arachis hypogaea HOM05D005376 ORTHO05D006481 4.7e-09 66.2 62 62.9
AL7G52340 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.4e-08 64.7 79 53.2
AL2G18000 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.5e-07 61.2 68 57.4
AL3G17700 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.5e-07 61.2 46 76.1
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.6e-07 60.5 71 50.7
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 3.4e-07 60.1 124 33.9
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 7.5e-07 58.9 112 34.8
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 1.7e-06 57.8 73 47.9
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 1.7e-06 57.8 124 35.5
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 2.8e-06 57.0 90 41.1
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 3.7e-06 56.6 141 31.9
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 3.7e-06 56.6 60 50.0
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 3.7e-06 56.6 158 34.2
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 3.7e-06 56.6 100 37.0
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.7e-06 56.6 134 35.1
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 4.8e-06 56.2 123 35.8
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 6.3e-06 55.8 158 35.4
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.3e-06 55.8 126 34.9
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 6.3e-06 55.8 61 49.2
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 8.3e-06 55.5 61 49.2


User provided reference genes

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