Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 0.0e+00 1916.4 966 100.0
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 0.0e+00 1201.0 960 65.1
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 0.0e+00 1118.6 885 65.5
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 3.2e-264 915.6 946 52.3
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 7.1e-264 914.4 941 50.7
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 1.6e-255 886.7 938 50.2
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 3.5e-255 885.6 995 47.7
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.0e-254 884.0 940 50.1
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 2.7e-247 859.4 947 50.1
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 1.6e-244 850.1 981 48.4
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 4.8e-244 848.6 911 50.1
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.1e-243 847.4 945 47.8
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 5.8e-242 841.6 942 48.4
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 5.5e-240 835.1 955 47.6
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 5.5e-240 835.1 942 48.3
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 2.5e-237 826.2 954 46.8
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 3.7e-236 822.4 940 47.0
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 8.1e-236 821.2 935 47.3
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 3.1e-235 819.3 951 46.2
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.7e-233 813.5 954 46.9
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 5.5e-232 808.5 959 46.5
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 7.1e-232 808.1 990 45.4
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 2.1e-228 796.6 1015 44.3
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.1e-228 796.6 954 45.9
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.1e-227 794.3 984 45.8
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 1.8e-227 793.5 986 45.2
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 5.3e-227 792.0 980 45.3
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 2.0e-226 790.0 940 45.7
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.1e-224 784.3 888 47.1
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 3.6e-223 779.2 852 49.3
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 7.9e-223 778.1 937 45.7
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 3.0e-222 776.2 955 44.8
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.6e-220 770.4 939 45.0
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 4.8e-220 768.8 930 45.4
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 2.9e-217 759.6 862 47.9
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 5.5e-216 755.4 913 45.0
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.1e-215 753.4 902 46.0
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.8e-214 750.4 947 43.8
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 2.6e-213 746.5 950 43.5
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 2.2e-212 743.4 967 44.2
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 8.2e-212 741.5 917 44.4
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 2.6e-210 736.5 979 42.7
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 2.6e-210 736.5 918 43.9
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 4.2e-208 729.2 942 43.1
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 5.5e-208 728.8 1006 43.7
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.1e-207 726.9 981 41.9
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 3.9e-206 722.6 942 43.9
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 2.7e-199 699.9 761 50.6
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 4.4e-197 692.6 817 46.6
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 9.7e-197 691.4 936 42.6
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 9.4e-192 674.9 987 41.8
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 2.8e-188 663.3 884 41.5
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 4.8e-188 662.5 793 46.5
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 6.3e-188 662.1 797 46.5
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 9.5e-184 648.3 755 47.9
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 5.7e-181 639.0 655 51.8
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 4.5e-178 629.4 806 46.2
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.5e-176 624.4 965 40.1
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 2.8e-175 620.2 936 39.1
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 2.0e-173 614.0 849 41.7
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 8.3e-172 608.6 678 50.0
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 5.0e-169 599.4 831 43.2
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.2e-165 588.2 727 45.0
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 5.8e-165 585.9 804 43.0
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.7e-164 584.3 929 37.9
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.9e-163 580.9 862 38.9
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 5.6e-160 569.3 660 48.0
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 6.2e-159 565.8 683 47.1
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.0e-153 548.5 831 39.7
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 7.1e-147 525.8 946 36.8
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 1.2e-146 525.0 487 55.4
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 6.7e-129 466.1 538 48.9
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 4.3e-128 463.4 777 38.4
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 1.3e-124 451.8 479 52.4
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 1.7e-124 451.4 420 58.8
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 2.3e-113 414.5 346 60.4
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 2.8e-103 380.9 461 44.3
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 2.0e-101 374.8 613 37.8
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.9e-99 368.2 282 63.1
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 8.8e-89 332.8 807 32.1
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 4.8e-87 327.0 394 42.9
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 2.5e-83 314.7 937 28.1
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 4.7e-74 283.9 243 60.9
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 4.0e-73 280.8 471 39.5
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 1.5e-72 278.9 383 38.6
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 5.4e-70 270.4 513 35.1
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 3.5e-69 267.7 932 27.1
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 7.5e-64 250.0 318 45.9
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 2.2e-63 248.4 904 27.2
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 2.0e-56 225.3 867 26.1
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 5.6e-51 207.2 172 57.0
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.6e-50 205.7 173 59.5
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 2.0e-48 198.7 197 55.3
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 3.4e-48 198.0 195 50.8
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 1.1e-46 193.0 217 49.3
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 1.8e-41 175.6 246 48.0
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 6.8e-41 173.7 217 39.6
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 4.1e-38 164.5 176 42.6
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 9.9e-32 143.3 129 51.2
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.3e-31 142.9 175 45.1
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.4e-31 140.6 124 53.2
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 4.6e-29 134.4 199 41.7
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 4.7e-26 124.4 260 32.7
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 6.2e-26 124.0 98 61.2
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.8e-25 122.5 159 42.1
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 9.0e-25 120.2 142 43.7
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 4.9e-23 114.4 96 56.2
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.7e-20 105.9 151 35.8
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 2.5e-19 102.1 114 48.2
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 4.8e-18 97.8 97 44.3
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.9e-14 85.9 96 44.8
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.4e-14 85.5 130 32.3
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.1e-13 82.4 103 41.7
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.5e-11 75.5 88 44.3
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 4.8e-10 71.2 130 33.8
Glyma.08G216300 Glycine max HOM05D001219 ORTHO05D001017 1.3e-07 63.2 243 25.5
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 1.3e-07 63.2 64 48.4
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.5e-06 58.9 83 42.2
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.5e-06 58.9 53 56.6
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 2.5e-06 58.9 501 21.4
Lalb_Chr25g0279201 Lupinus albus HOM05D001219 ORTHO05D001017 3.2e-06 58.5 231 26.0
Ca_04901_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 4.2e-06 58.2 554 20.0
Phvul.010G159100 Phaseolus vulgaris HOM05D001219 ORTHO05D001017 9.3e-06 57.0 242 25.6
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 9.3e-06 57.0 534 20.0


User provided reference genes

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