Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 2.7e-129 465.3 226 100.0
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 2.8e-118 428.7 226 89.8
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 4.0e-117 424.9 226 88.9
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 2.9e-112 408.7 226 85.0
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 7.5e-100 367.5 225 74.2
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 2.4e-98 362.5 225 73.8
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 4.6e-97 358.2 226 73.0
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 6.6e-96 354.4 221 72.9
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 6.6e-96 354.4 223 72.6
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 8.6e-96 354.0 226 72.1
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.5e-95 353.2 223 72.2
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 1.9e-95 352.8 221 73.8
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.9e-95 352.8 226 70.8
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.9e-95 352.8 224 71.9
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 3.3e-95 352.1 220 74.5
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 3.3e-95 352.1 221 73.3
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 4.3e-95 351.7 226 71.2
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 4.3e-95 351.7 220 73.6
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 4.3e-95 351.7 224 71.9
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 5.6e-95 351.3 223 71.7
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 7.3e-95 350.9 220 74.1
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.3e-95 350.9 223 71.7
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.3e-95 350.9 222 71.6
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 1.2e-94 350.1 226 71.7
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.2e-94 350.1 224 70.1
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.6e-94 349.7 224 71.0
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.6e-94 349.7 223 71.3
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 2.1e-94 349.4 226 69.5
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 4.7e-94 348.2 223 72.2
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 6.2e-94 347.8 221 73.3
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 1.1e-93 347.1 223 70.4
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.4e-93 346.7 221 72.4
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 1.4e-93 346.7 226 71.7
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 5.2e-93 344.7 223 70.4
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.2e-92 343.6 226 71.7
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.2e-92 343.6 220 71.8
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 1.5e-92 343.2 223 71.7
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.5e-92 343.2 226 68.6
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 1.5e-92 343.2 226 70.4
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 2.0e-92 342.8 224 72.3
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.0e-92 342.8 220 71.4
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 2.6e-92 342.4 220 69.5
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 2.6e-92 342.4 226 69.5
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 3.4e-92 342.0 223 70.0
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 3.4e-92 342.0 224 71.4
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.4e-92 341.7 226 71.2
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 4.4e-92 341.7 220 71.4
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 5.8e-92 341.3 225 71.1
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 5.8e-92 341.3 221 70.1
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 7.6e-92 340.9 225 71.6
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 7.6e-92 340.9 226 70.4
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 7.6e-92 340.9 226 70.4
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 7.6e-92 340.9 226 70.4
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.6e-92 340.9 220 71.8
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 9.9e-92 340.5 222 69.4
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 9.9e-92 340.5 225 69.8
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 1.3e-91 340.1 267 61.0
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.7e-91 339.7 221 70.1
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 3.7e-91 338.6 226 71.2
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 3.7e-91 338.6 223 68.6
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.7e-91 338.6 224 68.3
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 4.9e-91 338.2 224 68.8
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 4.9e-91 338.2 223 68.6
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 6.4e-91 337.8 224 70.5
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.4e-90 336.7 224 68.8
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 1.9e-90 336.3 226 68.6
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 1.9e-90 336.3 225 69.3
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 3.2e-90 335.5 226 69.5
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.2e-90 335.5 224 68.3
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 7.1e-90 334.3 223 68.6
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 2.1e-89 332.8 224 68.3
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 2.1e-89 332.8 229 69.9
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 2.7e-89 332.4 222 64.9
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 7.8e-89 330.9 221 69.2
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.0e-88 330.5 219 68.5
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.7e-88 329.7 222 64.0
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 3.0e-88 328.9 223 69.1
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 6.6e-88 327.8 226 64.6
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 7.3e-87 324.3 240 63.3
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 1.2e-86 323.6 226 63.7
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 8.1e-86 320.9 193 75.6
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 1.8e-85 319.7 254 59.1
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.8e-85 319.7 222 63.5
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 5.2e-85 318.2 225 64.4
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 6.8e-85 317.8 292 55.1
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 5.8e-84 314.7 219 63.9
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 2.9e-83 312.4 224 63.4
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 4.9e-83 311.6 243 58.4
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 8.4e-83 310.8 221 67.4
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 5.4e-82 308.1 187 77.0
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 5.1e-80 301.6 196 69.9
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.3e-78 297.0 188 71.8
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 6.2e-78 294.7 237 57.0
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.4e-77 293.5 219 64.4
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 1.4e-77 293.5 221 62.4
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.4e-77 292.7 191 69.6
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.5e-76 290.0 194 69.6
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 4.6e-73 278.5 228 53.9
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 1.3e-72 276.9 214 57.0
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 1.1e-71 273.9 212 59.0
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.3e-70 270.4 212 57.1
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 6.9e-69 264.6 212 57.5
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 9.0e-69 264.2 165 72.1
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.2e-68 263.8 228 53.5
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.7e-67 260.0 214 55.1
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 2.9e-67 259.2 244 52.9
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 4.9e-67 258.5 197 57.9
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.4e-67 258.1 228 53.1
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.6e-65 253.4 211 54.5
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 1.0e-64 250.8 216 54.6
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 3.0e-64 249.2 221 52.0
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 5.6e-63 245.0 215 53.0
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 7.4e-63 244.6 151 71.5
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.7e-59 233.4 224 51.8
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.7e-59 233.4 187 57.8
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 3.8e-59 232.3 151 70.2
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 7.9e-57 224.6 182 56.6
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.9e-55 219.9 152 67.8
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.7e-51 206.8 126 71.4
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 6.5e-51 204.9 205 46.3
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 7.4e-39 164.9 225 40.0
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.3e-38 164.1 164 45.1
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 9.1e-37 157.9 99 76.8
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 8.5e-35 151.4 232 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 3.0e-32 142.9 119 53.8
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 3.7e-22 109.4 68 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.8e-22 109.0 93 52.7
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 6.3e-22 108.6 102 48.0
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 1.2e-17 94.4 58 75.9
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 2.9e-11 73.2 58 67.2
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 4.0e-08 62.8 91 37.4
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 4.0e-08 62.8 38 76.3


User provided reference genes

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