Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 0.0e+00 1428.3 726 100.0
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 0.0e+00 1243.8 708 88.6
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 5.8e-303 1043.9 707 75.1
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 2.9e-302 1041.6 706 74.8
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 3.1e-211 739.2 719 55.9
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 5.2e-211 738.4 716 57.5
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.9e-205 719.9 723 53.7
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.6e-204 716.8 726 54.5
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.6e-204 716.8 721 54.1
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.8e-203 713.4 719 54.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 2.9e-201 706.1 719 54.4
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.1e-200 704.1 721 54.0
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.4e-200 703.7 719 54.1
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.4e-200 703.7 725 54.5
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 6.6e-198 694.9 734 51.6
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 1.5e-197 693.7 726 52.8
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 4.0e-195 685.6 727 52.5
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.0e-195 685.6 664 55.9
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 8.4e-193 677.9 722 51.9
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.2e-191 674.1 720 52.5
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.7e-191 672.9 721 52.0
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 2.1e-188 663.3 723 50.5
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 2.2e-185 653.3 710 53.0
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 3.8e-185 652.5 726 51.5
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 4.9e-185 652.1 726 51.1
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 7.1e-184 648.3 722 50.6
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 4.3e-181 639.0 716 49.2
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 9.6e-181 637.9 660 54.1
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.1e-180 636.7 738 49.7
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.1e-179 634.4 697 51.1
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.8e-179 633.6 717 49.4
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 4.0e-179 632.5 726 48.9
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 7.6e-178 628.2 752 49.6
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 9.9e-178 627.9 707 51.2
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 2.9e-177 626.3 713 49.9
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.8e-177 625.9 707 51.1
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 5.5e-176 622.1 767 47.2
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 7.1e-176 621.7 728 48.4
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.2e-175 620.9 725 49.2
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 1.6e-175 620.5 789 47.4
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.6e-175 620.5 719 48.4
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 2.1e-175 620.2 737 49.0
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.5e-175 619.4 737 48.6
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 3.0e-174 616.3 642 51.7
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 5.1e-174 615.5 729 47.6
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.5e-173 614.0 728 46.7
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.9e-173 613.6 717 50.6
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.9e-173 613.6 754 49.3
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 9.6e-173 611.3 807 44.9
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 9.6e-173 611.3 737 46.5
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 2.1e-172 610.1 714 50.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 4.8e-172 609.0 727 48.1
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.1e-171 607.8 725 45.7
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 3.1e-171 606.3 768 46.1
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 4.5e-170 602.4 714 46.2
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.0e-169 601.3 730 44.8
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 3.2e-168 596.3 725 45.4
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 4.2e-168 595.9 714 45.7
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.6e-167 594.0 712 47.8
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 7.9e-167 591.7 711 45.6
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.1e-165 587.8 725 45.4
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.5e-165 587.4 727 47.0
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 4.3e-165 585.9 721 46.5
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 7.4e-165 585.1 728 46.6
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.3e-164 584.3 771 42.8
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 9.0e-163 578.2 762 43.2
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 2.2e-161 573.5 734 44.4
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.2e-161 573.5 712 47.3
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 5.0e-161 572.4 724 46.3
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 4.3e-157 559.3 688 45.9
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 6.9e-155 552.0 707 45.5
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 5.9e-154 548.9 707 45.1
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 8.5e-153 545.0 723 42.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.4e-152 544.3 690 43.9
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.6e-151 539.3 665 48.7
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 3.0e-150 536.6 720 42.2
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 3.3e-149 533.1 719 42.7
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 8.8e-142 508.4 587 49.9
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.6e-141 506.9 678 44.1
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 2.2e-137 493.8 718 41.9
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.0e-126 456.4 572 47.6
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 7.2e-120 435.6 564 46.6
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.6e-119 433.3 431 55.2
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 4.9e-116 422.9 508 46.9
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.0e-114 417.5 724 36.3
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.7e-113 414.5 588 44.2
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 6.6e-113 412.5 561 42.6
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 1.0e-110 405.2 507 45.4
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.7e-105 387.9 428 50.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.7e-105 387.9 429 51.0
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.3e-100 371.7 526 42.0
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 3.7e-100 370.2 340 54.4
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 3.6e-95 353.6 327 57.8
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.5e-93 348.2 291 62.9
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.3e-92 345.1 349 53.6
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.9e-91 341.3 407 47.2
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.7e-90 337.4 368 50.8
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 3.1e-86 323.9 694 31.0
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 3.5e-82 310.5 802 29.9
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.0e-81 308.9 330 48.8
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.0e-81 308.9 333 52.0
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.1e-81 306.6 367 48.8
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 2.8e-79 300.8 344 47.4
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 4.4e-77 293.5 876 28.7
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.0e-73 280.8 660 29.5
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 3.0e-65 254.2 459 37.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 3.3e-64 250.8 195 61.5
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.2e-61 242.3 229 58.5
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 2.0e-61 241.5 276 51.1
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.3e-57 228.0 891 24.8
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 6.7e-57 226.5 161 68.3
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 1.5e-56 225.3 234 50.9
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.9e-51 208.4 161 65.2
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.6e-50 205.3 164 60.4
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 8.7e-49 199.5 269 43.9
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.5e-48 198.7 611 29.1
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 4.2e-43 180.6 239 46.0
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.6e-42 177.2 141 65.2
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.8e-41 175.3 251 43.0
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.2e-28 131.7 105 57.1
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 1.2e-26 125.9 249 38.6
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.6e-24 118.2 98 64.3
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 5.3e-22 110.5 169 40.8
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 4.2e-11 74.3 150 35.3
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 9.4e-11 73.2 160 33.8
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 2.6e-08 65.1 59 59.3
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 2.6e-08 65.1 132 34.1
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 1.7e-07 62.4 283 26.9
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.2e-07 62.0 49 59.2
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 6.3e-07 60.5 506 19.8
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.1e-06 59.7 103 36.9
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 9.1e-06 56.6 181 28.2


User provided reference genes

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