Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 3.3e-141 505.0 249 100.0
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 1.1e-115 420.2 252 80.2
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 6.8e-110 401.0 260 76.9
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 3.6e-87 325.5 254 64.6
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 3.1e-86 322.4 256 62.9
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 3.1e-86 322.4 254 63.8
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 6.8e-86 321.2 257 63.0
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 2.0e-85 319.7 257 62.6
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 5.8e-85 318.2 255 62.4
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.3e-84 317.0 261 61.7
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.3e-84 317.0 255 62.0
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 2.2e-84 316.2 249 62.2
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 2.2e-84 316.2 248 62.9
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 5.4e-83 311.6 253 61.7
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 7.1e-83 311.2 251 62.2
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 9.2e-83 310.8 253 60.9
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 2.7e-82 309.3 249 62.2
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 7.8e-82 307.8 258 61.2
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 2.3e-81 306.2 251 61.8
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 3.9e-81 305.4 251 62.9
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 8.6e-81 304.3 249 61.4
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 1.5e-80 303.5 249 61.0
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 2.5e-80 302.8 257 59.9
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 3.3e-80 302.4 255 59.2
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 5.6e-80 301.6 252 60.7
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 7.3e-80 301.2 252 60.3
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.2e-79 300.4 256 59.8
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.8e-79 299.3 248 61.7
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 3.6e-79 298.9 248 61.3
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.6e-79 298.9 248 61.3
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 4.7e-79 298.5 257 59.9
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.1e-79 297.7 248 60.9
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 1.1e-78 297.4 249 60.6
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.4e-78 297.0 248 60.9
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 6.8e-78 294.7 248 60.1
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 3.4e-77 292.4 254 58.7
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 5.8e-77 291.6 252 58.7
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 9.9e-77 290.8 254 58.3
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 1.7e-76 290.0 257 55.6
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 2.2e-76 289.7 263 53.6
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.9e-76 289.3 248 60.1
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.9e-76 289.3 248 60.1
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 2.9e-76 289.3 252 59.1
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 3.8e-76 288.9 250 56.8
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 4.9e-76 288.5 315 49.2
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 8.4e-76 287.7 252 58.3
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 1.9e-75 286.6 250 56.8
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 3.2e-75 285.8 251 59.8
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 4.1e-75 285.4 254 57.5
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 9.2e-75 284.3 263 55.5
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 2.7e-74 282.7 251 57.4
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 2.7e-74 282.7 248 58.9
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 2.7e-74 282.7 251 56.6
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 3.5e-74 282.3 257 56.8
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 1.3e-73 280.4 257 56.4
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 1.3e-73 280.4 263 55.1
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 3.0e-73 279.3 263 55.9
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 3.0e-73 279.3 221 63.8
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 8.7e-73 277.7 257 55.6
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 8.7e-73 277.7 257 55.6
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 8.7e-73 277.7 257 55.6
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.5e-72 276.9 256 55.9
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 2.5e-72 276.2 264 55.3
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 4.3e-72 275.4 250 55.6
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 5.6e-72 275.0 222 65.3
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 9.6e-72 274.2 256 57.0
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.6e-71 273.5 263 55.5
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 4.7e-71 271.9 263 54.8
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 6.2e-71 271.6 260 54.2
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 8.1e-71 271.2 263 54.4
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 8.1e-71 271.2 259 56.4
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 2.4e-70 269.6 251 53.4
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 3.1e-70 269.2 267 53.2
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 4.0e-70 268.9 261 54.4
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 1.2e-69 267.3 244 54.9
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 1.5e-69 266.9 263 52.5
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 2.6e-69 266.2 259 55.2
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 2.6e-69 266.2 251 53.0
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 3.4e-69 265.8 251 53.4
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 3.4e-69 265.8 253 54.2
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 4.4e-69 265.4 273 52.7
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 5.8e-69 265.0 261 53.3
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 7.6e-69 264.6 260 53.8
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 1.4e-67 260.4 267 53.2
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 2.3e-65 253.1 246 52.8
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 3.9e-65 252.3 253 51.4
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 6.6e-65 251.5 205 64.9
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 9.6e-64 247.7 209 60.3
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.8e-62 243.4 252 49.6
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 1.5e-61 240.4 212 58.0
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 2.6e-61 239.6 228 53.5
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.2e-60 236.5 263 48.7
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 1.4e-59 233.8 228 52.6
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 2.4e-59 233.0 248 50.4
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 9.3e-59 231.1 248 50.0
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 5.6e-56 221.9 240 50.8
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.6e-55 220.3 263 47.1
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 2.8e-55 219.5 190 58.9
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 4.0e-54 215.7 165 66.1
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 7.9e-50 201.4 162 60.5
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 9.6e-48 194.5 151 63.6
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 1.9e-40 170.2 182 48.9
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 2.6e-37 159.8 264 34.8
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 2.6e-37 159.8 149 53.7
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 2.6e-37 159.8 145 52.4
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 8.5e-36 154.8 96 78.1
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.1e-35 154.5 146 52.7
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.1e-35 154.5 146 52.7
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.1e-35 154.5 146 52.7
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 2.5e-35 153.3 278 32.7
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 1.0e-33 147.9 122 54.1
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 8.8e-33 144.8 209 41.6
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 3.3e-32 142.9 158 48.7
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 4.1e-30 136.0 158 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 6.9e-30 135.2 267 33.3
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 2.9e-28 129.8 112 58.9
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 3.0e-25 119.8 109 54.1
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.5e-24 117.5 70 80.0
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 4.1e-22 109.4 96 52.1
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 7.0e-22 108.6 162 45.7
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 2.6e-21 106.7 92 55.4
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 7.2e-19 98.6 92 52.2
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.2e-18 97.8 81 61.7
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 2.3e-17 93.6 77 62.3
HanXRQChr12g0360941 Helianthus annuus HOM05D005673 ORTHO05D007081 8.2e-15 85.1 44 86.4
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 1.0e-12 78.2 182 31.9
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.7e-12 77.4 73 50.7
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 2.2e-12 77.0 95 43.2
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 8.5e-12 75.1 156 32.1
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 5.2e-09 65.9 48 66.7
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 2.4e-06 57.0 62 50.0


User provided reference genes

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