Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 0.0e+00 1356.7 795 100.0
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 4.4e-272 941.4 729 73.8
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 4.9e-263 911.4 725 75.9
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 6.7e-252 874.4 728 71.8
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 4.9e-247 858.2 721 71.4
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 7.1e-246 854.4 726 70.2
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 4.3e-243 845.1 720 71.1
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 1.6e-242 843.2 766 67.9
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 8.2e-242 840.9 732 68.3
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 5.7e-235 818.1 767 64.0
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 1.2e-232 810.4 744 66.9
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 1.3e-231 807.0 732 67.5
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 5.0e-231 805.1 733 68.3
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 2.0e-227 793.1 732 63.4
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 2.6e-227 792.7 732 63.4
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 2.6e-227 792.7 814 61.8
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 2.8e-226 789.3 766 65.0
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 3.7e-226 788.9 766 65.0
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 6.3e-226 788.1 768 64.3
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.1e-225 787.3 725 66.8
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 4.1e-225 785.4 720 67.1
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 1.2e-224 783.9 720 67.4
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.5e-224 783.5 766 66.2
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.5e-224 782.3 763 62.3
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 4.5e-224 781.9 722 66.2
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 1.0e-223 780.8 720 66.7
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.7e-223 780.0 720 66.5
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 2.9e-223 779.2 720 66.2
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 1.5e-222 776.9 720 66.4
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 4.2e-222 775.4 721 66.4
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 5.5e-222 775.0 722 66.1
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 5.5e-222 775.0 721 63.0
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 5.5e-222 775.0 719 68.6
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 5.5e-222 775.0 720 66.5
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 2.1e-221 773.1 722 65.9
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.6e-221 772.3 721 66.4
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 3.6e-221 772.3 720 66.5
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 4.7e-221 771.9 722 66.1
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 6.1e-221 771.5 767 63.4
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.4e-220 770.4 722 66.2
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 1.4e-220 770.4 724 67.0
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 3.0e-220 769.2 768 63.3
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 3.9e-220 768.8 728 62.6
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 5.2e-220 768.5 723 65.4
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 5.2e-220 768.5 720 66.5
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 6.7e-220 768.1 721 66.4
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 8.8e-220 767.7 720 66.0
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 8.8e-220 767.7 720 66.0
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 8.8e-220 767.7 722 66.1
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 1.1e-219 767.3 720 65.8
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 1.1e-219 767.3 770 63.4
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.5e-219 766.9 720 66.1
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 2.6e-219 766.1 720 65.7
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 2.6e-219 766.1 722 65.1
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 3.3e-219 765.8 720 65.8
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 5.7e-219 765.0 720 65.8
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 7.4e-219 764.6 720 65.8
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 7.4e-219 764.6 721 65.9
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 9.7e-219 764.2 720 65.6
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 9.7e-219 764.2 720 65.1
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.3e-218 763.8 721 66.0
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 1.3e-218 763.8 723 66.0
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 1.7e-218 763.5 720 66.1
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 1.7e-218 763.5 721 65.0
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 3.7e-218 762.3 720 65.6
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.7e-218 762.3 721 65.7
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 4.8e-218 761.9 720 65.4
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 6.3e-218 761.5 766 62.8
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 8.2e-218 761.1 722 64.5
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 8.2e-218 761.1 720 65.4
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.8e-217 760.0 720 65.6
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.8e-217 760.0 720 65.6
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 2.4e-217 759.6 765 62.9
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 3.1e-217 759.2 720 65.0
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 4.1e-217 758.8 766 62.9
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 1.2e-216 757.3 720 64.7
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 2.0e-216 756.5 723 64.7
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 2.0e-216 756.5 723 65.4
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 5.9e-216 755.0 720 66.0
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 1.0e-215 754.2 722 67.0
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.0e-215 754.2 723 65.1
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.0e-215 754.2 723 65.1
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.3e-215 753.8 722 67.0
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 3.8e-215 752.3 723 64.7
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 5.0e-215 751.9 733 64.7
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 5.0e-215 751.9 719 63.8
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 6.5e-215 751.5 719 64.5
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 6.5e-215 751.5 720 64.0
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 8.5e-215 751.1 720 64.6
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 1.1e-214 750.7 723 64.6
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 1.5e-214 750.4 723 64.6
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 7.2e-214 748.0 720 64.2
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 3.6e-213 745.7 726 63.9
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.8e-212 743.4 720 63.5
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 1.8e-212 743.4 766 62.1
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.5e-211 740.3 724 63.5
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.5e-211 740.3 773 60.7
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 3.4e-211 739.2 727 64.6
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 7.5e-211 738.0 720 63.8
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.3e-210 737.3 723 64.0
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 1.7e-210 736.9 723 63.1
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 4.8e-210 735.3 725 63.6
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 4.1e-209 732.3 729 63.0
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 7.0e-209 731.5 727 64.0
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 1.6e-208 730.3 803 59.4
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 3.5e-208 729.2 728 62.9
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 3.5e-208 729.2 728 62.9
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.6e-205 720.3 730 61.5
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 2.3e-204 716.5 728 63.9
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 2.3e-204 716.5 728 63.9
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 8.8e-204 714.5 695 65.0
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 1.5e-203 713.8 725 63.4
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 1.5e-203 713.8 725 63.4
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 3.4e-203 712.6 766 60.1
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 4.9e-202 708.8 721 62.6
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 4.5e-200 702.2 721 62.7
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 7.7e-200 701.4 720 61.4
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 7.7e-200 701.4 720 61.4
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 1.3e-199 700.7 734 59.8
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 2.9e-199 699.5 720 61.5
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 7.2e-198 694.9 720 62.8
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 4.7e-197 692.2 731 61.4
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 6.1e-197 691.8 673 64.8
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 8.9e-196 688.0 720 62.6
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 3.4e-195 686.0 738 63.0
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 2.4e-193 679.9 728 59.5
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 1.9e-190 670.2 720 63.3
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 4.4e-187 659.1 674 63.5
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 2.4e-185 653.3 721 57.7
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 3.0e-183 646.4 679 61.6
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 4.3e-166 589.3 742 55.0
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 5.2e-164 582.4 734 54.6
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.5e-163 580.9 656 59.9
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 8.1e-157 558.5 729 53.9
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.5e-155 554.3 737 53.3
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 9.9e-155 551.6 628 60.2
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 9.9e-147 525.0 734 51.2
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 7.1e-137 492.3 730 49.3
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.8e-135 487.6 718 40.9
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 4.8e-133 479.6 791 46.8
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 7.2e-129 465.7 758 47.4
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 9.0e-124 448.7 721 47.2
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 4.8e-117 426.4 740 45.3
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.6e-115 420.6 459 65.8
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 4.2e-113 413.3 748 44.7
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 7.9e-112 409.1 337 63.2
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 4.4e-110 403.3 805 41.6
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.0e-102 377.9 348 58.9
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 1.3e-98 365.2 352 59.1
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 7.0e-92 342.8 259 66.4
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 7.0e-92 342.8 259 66.4
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 2.1e-80 304.7 267 59.9
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 7.3e-65 253.1 253 53.0
Zm00001eb159690 Zea mays HOM05D003747 ORTHO05D051588 2.9e-53 214.5 289 44.6
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 1.1e-49 202.6 193 54.4
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.5e-41 174.9 515 30.1
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 5.3e-39 167.2 194 51.0
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 6.9e-39 166.8 173 56.1
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.0e-38 165.2 176 54.5
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 7.6e-38 163.3 173 54.9
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.3e-32 146.0 148 56.1
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 2.8e-32 144.8 152 52.0
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 2.6e-30 138.3 153 50.3
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 1.5e-25 122.5 371 45.3
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.6e-22 111.7 75 74.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.4e-22 111.3 65 84.6
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.7e-21 109.0 66 81.8
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 2.5e-17 95.1 67 70.1
Nn5g30522 Nelumbo nucifera HOM05D003747 ORTHO05D005080 6.9e-15 87.0 61 70.5
Lj3A744G93 Lonicera japonica HOM05D000041 ORTHO05D000452 3.4e-14 84.7 66 59.1
Lj3A744G94 Lonicera japonica HOM05D000041 ORTHO05D004955 5.9e-14 84.0 65 61.5
Lj3A743G72 Lonicera japonica HOM05D000041 ORTHO05D000452 1.0e-13 83.2 66 57.6
Pp3c1_6530 Physcomitrium patens HOM05D003747 ORTHO05D005080 3.8e-13 81.3 63 61.9
Zm00001eb159680 Zea mays HOM05D003747 ORTHO05D029724 5.0e-13 80.9 242 28.5
Lsat_1_v5_gn_4_36661 Lactuca sativa HOM05D003747 ORTHO05D005080 2.5e-12 78.6 72 58.3
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 1.2e-11 76.3 118 41.5
Rhsim06G0014000 Rhododendron simsii HOM05D003747 ORTHO05D005080 4.8e-08 64.3 46 69.6
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 1.4e-07 62.8 46 60.9
Lsat_1_v5_gn_8_75581 Lactuca sativa HOM05D000041 ORTHO05D000452 3.1e-07 61.6 70 44.3
FAN12G1929 Fragaria x ananassa HOM05D003747 ORTHO05D029724 9.1e-07 60.1 56 55.4
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-06 59.7 46 58.7
Cpa.g.sc99.31 Carica papaya HOM05D003747 ORTHO05D005080 7.7e-06 57.0 65 46.2


User provided reference genes

Program Settings