Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.3e-259 899.4 544 100.0
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 3.1e-176 622.5 550 72.7
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 2.1e-164 583.2 563 67.9
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.2e-138 497.7 569 58.7
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 3.9e-134 482.6 550 58.7
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.1e-133 481.1 552 56.7
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.4e-130 469.5 559 55.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 2.9e-129 466.5 556 55.9
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.1e-128 464.5 551 56.3
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 7.1e-128 461.8 555 52.6
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 3.0e-126 456.4 540 55.0
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 7.3e-125 451.8 537 55.5
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.8e-124 449.9 555 50.8
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 4.0e-123 446.0 551 51.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-122 444.5 558 53.9
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.0e-122 443.7 564 55.5
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.0e-122 443.7 552 54.2
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 7.6e-122 441.8 560 57.5
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 9.9e-122 441.4 571 53.6
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 9.9e-122 441.4 561 53.7
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.6e-119 434.1 586 52.6
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.7e-118 430.6 568 51.9
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 5.1e-118 429.1 557 55.5
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 6.6e-118 428.7 597 50.9
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 8.7e-118 428.3 569 52.7
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 8.7e-118 428.3 581 53.9
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 1.9e-117 427.2 552 55.6
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.9e-117 427.2 573 52.2
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.3e-117 426.4 562 51.6
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 3.3e-117 426.4 546 57.1
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 4.3e-117 426.0 562 52.0
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.6e-116 422.9 535 49.7
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 4.8e-116 422.5 560 49.6
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 6.2e-116 422.2 533 53.5
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 6.2e-116 422.2 566 51.4
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 8.1e-116 421.8 557 52.8
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 8.1e-116 421.8 588 52.9
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.1e-115 421.4 582 50.7
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.4e-115 421.0 558 49.6
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.8e-115 420.6 569 51.3
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 5.3e-115 419.1 548 52.7
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 5.3e-115 419.1 550 53.1
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.5e-114 417.5 526 48.9
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.5e-114 417.5 558 52.2
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 2.6e-114 416.8 561 48.0
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.4e-114 416.0 541 51.9
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.3e-113 414.5 567 55.7
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.9e-113 413.3 531 56.1
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 3.8e-113 412.9 546 56.6
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 4.9e-113 412.5 531 56.9
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.1e-112 411.4 524 50.4
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 2.4e-112 410.2 552 50.9
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 5.4e-112 409.1 557 49.0
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 9.3e-112 408.3 552 52.0
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 1.2e-111 407.9 545 50.8
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.6e-111 407.5 544 52.2
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 2.1e-111 407.1 555 51.4
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 2.1e-111 407.1 566 49.6
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 6.0e-111 405.6 539 55.1
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 7.8e-111 405.2 552 51.1
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.0e-110 404.8 547 50.8
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 2.3e-110 403.7 544 50.7
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 3.9e-110 402.9 556 50.7
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 8.7e-110 401.7 624 45.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 4.3e-109 399.4 566 49.1
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.6e-109 399.1 531 52.9
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 5.6e-109 399.1 549 48.8
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.3e-108 397.9 562 48.6
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.6e-108 397.5 542 50.9
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 4.8e-108 396.0 543 48.6
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 6.2e-108 395.6 548 48.9
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 6.2e-108 395.6 549 49.9
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 8.1e-108 395.2 545 50.1
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 8.1e-108 395.2 544 49.4
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.4e-107 394.4 542 49.8
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.4e-107 394.4 532 50.2
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.4e-107 393.7 565 48.3
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 4.0e-107 392.9 545 47.0
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 5.3e-107 392.5 562 51.8
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 6.9e-107 392.1 634 48.6
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.2e-106 391.3 538 51.9
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.5e-106 391.0 542 49.8
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 2.6e-106 390.2 557 48.5
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.4e-106 389.8 538 49.8
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 9.9e-106 388.3 546 51.8
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 6.4e-105 385.6 534 52.1
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.1e-104 384.8 532 51.3
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.9e-104 384.0 565 53.8
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.9e-104 384.0 543 49.2
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 2.4e-104 383.6 549 51.5
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 7.1e-104 382.1 522 45.2
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 9.3e-104 381.7 548 48.2
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.7e-103 380.2 550 47.8
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.9e-102 376.3 530 47.2
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.7e-102 375.2 503 46.3
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 3.7e-100 369.8 545 47.2
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 6.2e-100 369.0 555 46.3
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 2.4e-99 367.1 560 53.0
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 4.0e-99 366.3 567 45.9
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.2e-98 364.8 527 45.0
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.3e-97 361.3 552 46.4
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 7.4e-93 345.5 551 47.0
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 9.6e-93 345.1 517 49.3
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.7e-92 343.2 547 46.8
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.8e-91 340.9 563 48.0
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 7.1e-88 328.9 540 45.0
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.2e-87 328.2 482 47.9
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.9e-83 312.4 367 54.0
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.4e-80 304.7 592 43.9
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 3.9e-78 296.6 361 52.4
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.6e-71 274.6 514 45.1
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 7.4e-69 265.8 529 41.0
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.0e-66 257.7 544 41.2
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.3e-65 255.0 485 42.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.9e-65 253.8 479 39.9
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.4e-62 245.0 516 36.2
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 3.9e-62 243.4 170 73.5
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.0e-58 231.1 369 47.4
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 2.2e-57 227.6 559 33.3
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.0e-50 204.5 126 84.1
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.3e-49 201.8 252 48.0
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 5.5e-48 196.4 251 47.0
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 6.8e-46 189.5 148 63.5
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 2.2e-44 184.5 348 43.4
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 2.8e-44 184.1 253 42.3
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 9.1e-43 179.1 183 54.6
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 3.4e-37 160.6 238 39.9
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 6.4e-36 156.4 244 42.6
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 4.3e-32 143.7 103 68.0
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 4.3e-32 143.7 103 68.0
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.1e-31 141.4 114 68.4
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.0e-30 137.1 403 37.2
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 5.0e-25 120.2 151 52.3
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 8.1e-23 112.8 111 51.4
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.2e-19 100.9 103 52.4
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 5.4e-19 100.1 73 69.9
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.3e-16 90.9 62 71.0
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 5.6e-16 90.1 253 30.4
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.4e-14 85.5 73 67.1
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 1.9e-11 75.1 70 57.1
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.6e-10 72.0 92 47.8
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 6.0e-10 70.1 60 63.3
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 6.0e-10 70.1 89 48.3
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.5e-08 64.7 68 48.5
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 7.3e-08 63.2 100 40.0
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 4.0e-06 57.4 67 49.3


User provided reference genes

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