Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 4196.4 2111 100.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 3138.2 2204 72.5
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 3034.2 2206 70.8
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2430.2 2273 56.2
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2398.2 2283 55.2
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2328.1 2255 54.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2233.8 2274 51.2
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2218.7 2188 53.4
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2211.8 2291 51.2
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2210.3 2261 51.8
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2209.9 2253 52.5
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2199.1 2291 51.8
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2196.4 2280 51.7
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2188.3 2258 51.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2185.2 2247 51.6
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2184.5 2314 50.8
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2180.6 2188 52.8
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2175.6 2254 51.3
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2175.2 2263 51.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2160.6 2240 51.1
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2156.3 2260 50.4
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2150.9 2247 50.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2144.0 2256 50.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2135.1 2256 49.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2132.5 2250 50.4
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2129.4 2260 51.0
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2127.8 2259 50.7
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2127.4 2261 50.2
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2127.4 2265 49.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2127.1 2261 50.1
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2120.5 2273 49.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2119.4 2201 50.8
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2118.2 2294 48.9
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2114.7 2294 48.7
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2112.4 2290 48.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2111.6 2231 50.6
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2107.0 2234 49.7
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2105.9 2290 48.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2100.5 2237 50.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2095.5 2244 49.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2088.9 2271 49.1
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2088.2 2271 49.1
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2087.4 2249 49.9
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2081.2 2112 52.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2065.4 2230 49.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2059.3 2267 49.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2055.0 2268 48.8
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2053.1 2251 49.3
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2052.3 2261 49.5
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2045.4 2264 49.0
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2038.1 2260 48.5
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2033.1 2251 48.6
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2032.7 2260 48.6
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2032.3 2257 48.1
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2030.8 2236 49.0
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2029.6 2272 48.9
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2029.6 2384 47.0
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2027.3 2288 48.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2020.4 2298 47.7
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2015.7 2226 48.6
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2015.0 2229 48.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2001.9 2339 47.5
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 1999.6 2267 47.6
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1991.5 2223 48.3
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1985.7 2217 47.6
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1981.1 2255 47.1
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1972.2 2220 47.8
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1970.7 2226 48.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1958.7 2227 47.5
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1947.2 2216 47.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1939.1 2254 47.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1932.5 2226 47.2
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1931.4 2229 46.7
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1917.1 2213 47.1
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1916.0 2217 47.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1913.7 2253 46.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1904.0 2221 46.8
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1903.6 2236 46.4
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 1892.1 2244 46.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 1892.1 2250 46.1
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1891.7 2214 46.6
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1880.1 2222 46.3
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1879.0 2244 46.1
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1858.6 2240 46.0
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1839.3 1887 52.6
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1828.9 1887 52.6
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1825.4 2171 46.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1731.1 2238 43.8
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1721.1 2247 42.4
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1657.1 1836 48.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1644.4 2256 42.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1516.1 2300 39.2
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1445.3 2110 39.9
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1403.7 1459 51.3
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1392.5 1458 50.8
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1365.1 1454 50.6
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1350.5 1393 52.0
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1271.9 1265 52.6
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1210.7 1208 52.8
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1164.1 1192 51.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1102.4 1097 53.8
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1090.1 1242 47.7
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1085.1 1492 40.7
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.7e-294 1017.3 1136 47.9
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 6.2e-281 972.2 1030 50.7
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 9.1e-248 862.1 1008 47.4
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 6.5e-238 829.3 1012 45.4
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 2.3e-235 820.8 1207 39.3
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 4.5e-231 806.6 2372 26.8
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.5e-213 748.4 1282 35.8
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.1e-203 715.7 1914 28.4
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.3e-193 682.2 1956 28.0
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 1.9e-192 678.3 905 43.0
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 6.9e-179 633.3 773 46.1
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.9e-176 625.2 746 44.6
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 9.3e-176 622.9 2345 25.0
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.0e-166 592.8 591 51.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.1e-143 515.4 817 36.0
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.7e-119 435.3 654 38.8
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 5.6e-112 411.0 470 48.5
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.1e-111 409.1 456 47.8
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.0e-102 380.2 473 44.8
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.3e-102 379.0 261 70.1
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 2.8e-79 302.4 372 43.0
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.3e-71 276.9 317 44.8
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.3e-65 256.1 475 31.8
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 6.9e-54 218.0 310 40.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 9.3e-51 207.6 150 67.3
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.0e-50 204.9 186 57.0
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.5e-48 199.5 250 47.2
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 7.4e-48 198.0 277 43.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 6.3e-47 194.9 353 33.1
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 4.1e-46 192.2 122 77.0
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.7e-44 186.8 329 33.7
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 1.0e-41 177.6 123 67.5
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 6.3e-39 168.3 137 67.9
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 3.2e-35 156.0 218 41.3
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 9.4e-35 154.5 110 69.1
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.3e-31 144.1 271 35.1
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 6.3e-31 141.7 143 50.3
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.1e-30 139.4 100 69.0
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.7e-28 133.7 236 34.7
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 7.9e-26 124.8 137 46.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.0e-25 124.4 230 33.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 5.2e-25 122.1 243 33.7
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 8.8e-25 121.3 307 29.3
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.4e-22 114.0 262 30.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-22 113.6 98 57.1
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-22 113.2 186 41.4
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 3.2e-19 102.8 142 43.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 7.2e-19 101.7 194 36.1
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.2e-18 100.9 67 68.7
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 2.9e-12 79.7 105 37.1
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.2e-11 76.3 73 50.7
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.4e-11 74.7 127 30.7
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.6e-10 72.8 103 37.9
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 9.8e-08 64.7 42 78.6
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 2.4e-06 60.1 65 41.5


User provided reference genes

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