Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 0.0e+00 1849.3 946 100.0
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 0.0e+00 1220.3 879 71.9
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 0.0e+00 1163.7 952 67.1
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.4e-302 1040.8 879 60.3
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.9e-298 1029.2 890 59.6
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.3e-298 1027.3 886 59.8
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.2e-294 1015.8 883 58.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.3e-291 1006.5 876 60.3
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.1e-290 1003.4 883 59.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 9.9e-287 990.3 921 56.6
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.2e-285 984.9 877 58.2
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 2.3e-283 979.2 882 57.4
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 7.4e-282 974.2 873 58.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 3.4e-279 965.3 888 57.5
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 8.4e-278 960.7 880 56.9
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.0e-275 953.7 879 55.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.8e-272 943.0 882 54.5
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 6.9e-272 941.0 891 56.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.3e-267 926.0 758 62.5
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.3e-265 920.2 879 56.0
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.4e-264 916.0 879 54.9
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 4.1e-264 915.2 881 54.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.0e-262 910.6 881 54.5
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.0e-262 910.6 868 56.9
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.3e-262 910.2 834 56.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.1e-261 907.1 886 54.4
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.2e-261 905.2 880 53.9
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 9.4e-261 904.0 887 54.7
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 9.4e-261 904.0 884 54.2
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.7e-260 902.5 884 54.4
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.7e-260 902.5 908 55.0
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.4e-259 900.2 892 53.5
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.0e-258 896.3 909 52.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 3.3e-258 895.6 876 52.6
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.7e-258 894.8 860 54.7
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.3e-257 891.3 877 53.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-256 890.6 877 53.4
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.1e-256 888.6 886 52.8
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.6e-255 885.9 881 54.3
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 3.8e-254 882.1 869 53.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 3.9e-251 872.1 879 52.3
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.1e-251 871.7 877 52.6
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.5e-250 870.2 885 51.6
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-250 870.2 877 52.3
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 4.8e-249 865.1 880 51.6
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.4e-248 862.8 881 51.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.5e-247 860.1 890 53.4
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.0e-246 857.4 880 51.7
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.3e-246 857.1 919 52.7
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.6e-244 850.1 945 50.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 3.0e-243 845.9 877 51.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.7e-241 839.0 877 51.4
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 4.5e-239 832.0 851 52.3
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.3e-238 830.5 852 52.8
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.2e-237 825.9 875 50.6
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.2e-237 825.9 852 52.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.2e-237 825.5 909 50.6
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 9.4e-237 824.3 879 50.2
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.2e-235 818.5 850 52.2
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.3e-233 813.9 881 49.6
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 6.3e-233 811.6 881 50.2
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 8.5e-230 801.2 848 52.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.6e-228 795.8 913 48.5
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.2e-227 792.0 877 49.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.0e-226 790.0 779 54.0
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.1e-224 782.7 890 49.3
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 8.6e-222 774.6 865 48.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 3.3e-221 772.7 881 48.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.0e-219 766.1 864 47.2
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 8.9e-219 764.6 1341 38.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 5.4e-216 755.4 887 45.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 4.7e-212 742.3 846 48.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.8e-210 735.3 884 47.3
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 4.1e-208 729.2 880 47.0
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.0e-207 726.9 850 46.0
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.3e-206 723.4 865 44.4
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.3e-203 713.4 842 44.7
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-202 710.3 871 46.8
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.6e-202 709.9 871 46.8
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 5.2e-195 685.6 755 51.5
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-194 684.1 882 45.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.4e-194 682.6 864 46.9
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 4.6e-191 672.5 797 44.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 3.6e-188 662.9 872 43.9
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 9.9e-186 654.8 847 42.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 6.4e-185 652.1 852 44.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 8.4e-185 651.7 852 44.0
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 9.3e-184 648.3 941 41.8
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 8.7e-182 641.7 852 43.2
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-181 641.3 852 43.2
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.1e-181 641.3 852 43.1
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.5e-181 641.0 847 43.1
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.5e-181 640.2 871 43.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.4e-179 634.4 848 42.6
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.5e-178 630.9 847 42.1
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.8e-178 629.0 902 39.6
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.2e-176 623.2 886 40.0
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 3.5e-175 619.8 1375 32.7
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.5e-175 619.8 672 51.2
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 4.6e-175 619.4 848 41.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 7.9e-175 618.6 848 41.3
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 3.9e-174 616.3 849 41.9
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 6.6e-174 615.5 848 40.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.4e-168 597.0 898 38.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 2.1e-167 594.0 863 41.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.0e-167 592.4 721 44.5
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.1e-165 588.2 859 42.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.4e-161 572.0 847 39.6
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.5e-157 561.2 865 38.2
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.4e-152 544.7 521 54.5
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.1e-149 535.0 462 58.7
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 7.4e-149 532.3 909 38.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.1e-143 514.2 410 63.2
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.1e-141 508.4 577 49.9
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.1e-127 461.1 422 55.7
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.6e-125 454.1 636 42.3
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.5e-120 438.3 321 67.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.7e-113 414.8 332 63.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 6.6e-105 386.3 1097 27.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.3e-104 382.9 431 48.3
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.7e-100 371.7 788 32.1
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.6e-98 365.2 312 60.6
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 9.5e-96 355.9 388 47.9
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 6.8e-94 349.7 409 43.3
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.7e-92 345.1 359 50.7
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 9.2e-91 339.3 809 32.0
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.5e-90 337.4 392 48.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-89 334.7 434 42.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.6e-87 328.6 191 81.2
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.1e-86 325.9 356 48.0
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.0e-86 323.9 389 45.8
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.2e-79 302.4 415 42.7
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 8.4e-76 289.7 397 43.6
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.4e-75 288.1 279 53.4
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.3e-72 277.7 468 35.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.1e-70 272.7 590 32.2
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 5.6e-64 250.4 279 50.2
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.3e-63 249.2 253 50.2
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.1e-62 244.6 498 32.5
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.1e-58 231.9 181 63.0
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 4.6e-58 230.7 295 43.1
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.0e-57 228.0 345 41.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 9.6e-48 196.4 353 34.3
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.8e-46 192.2 336 35.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.4e-45 188.0 137 64.2
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 4.5e-45 187.6 185 55.1
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 5.8e-45 187.2 334 37.4
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.0e-44 186.4 322 33.9
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.3e-44 186.0 90 98.9
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.3e-41 175.3 146 59.6
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.8e-39 168.3 137 60.6
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.6e-37 161.8 162 52.5
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.7e-34 151.8 242 37.2
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.0e-33 148.3 119 59.7
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 9.7e-32 143.3 101 64.4
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.7e-31 141.4 200 40.5
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 6.9e-30 137.1 151 51.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 4.5e-29 134.4 89 68.5
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.2e-28 132.1 191 41.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 3.8e-28 131.3 129 51.9
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.9e-27 129.0 174 43.7
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 1.2e-26 126.3 202 41.1
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.6e-26 125.9 165 41.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.5e-24 119.4 81 66.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 2.6e-24 118.6 80 66.2
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 6.9e-22 110.5 84 60.7
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 2.6e-21 108.6 129 44.2
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 7.7e-21 107.1 86 59.3
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-20 105.5 122 46.7
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.2e-19 101.3 118 43.2
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.6e-18 99.4 161 40.4
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 1.1e-14 86.7 71 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.1e-14 85.1 96 41.7
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.6e-13 82.0 99 45.5
Lsat_1_v5_gn_2_90320 Lactuca sativa HOM05D003469 ORTHO05D004084 5.0e-12 77.8 65 58.5
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.5e-12 77.0 61 50.8
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.2e-10 73.2 820 19.6
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 8.0e-10 70.5 901 18.5
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.0e-09 70.1 50 60.0
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 2.6e-08 65.5 87 48.3
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 2.6e-08 65.5 48 60.4
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.3e-07 63.2 85 44.7
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.2e-07 62.4 84 44.0
Mapoly0157s0006 Marchantia polymorpha HOM05D001509 ORTHO05D001361 2.4e-06 58.9 185 23.8
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 5.3e-06 57.8 94 38.3
Lsat_1_v5_gn_5_166380 Lactuca sativa HOM05D001670 ORTHO05D004084 7.0e-06 57.4 46 63.0


User provided reference genes

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