Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 5.6e-86 320.9 157 100.0
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 2.6e-83 312.0 157 97.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.9e-82 308.5 157 97.5
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.0e-79 300.1 157 94.9
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.3e-79 299.7 157 94.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.1e-78 296.6 157 93.6
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 3.3e-78 295.0 157 92.4
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.3e-78 295.0 154 93.5
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.3e-78 294.7 149 96.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 4.3e-78 294.7 155 91.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 5.6e-78 294.3 144 99.3
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.4e-78 293.9 144 98.6
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 9.6e-78 293.5 149 94.6
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 9.6e-78 293.5 157 92.4
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 9.6e-78 293.5 157 91.7
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.3e-77 293.1 145 97.2
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.3e-77 293.1 157 91.7
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.3e-77 293.1 144 98.6
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.3e-77 293.1 144 98.6
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.3e-77 293.1 157 91.1
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.1e-77 292.4 157 91.1
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.1e-77 292.4 157 91.1
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.8e-77 292.0 157 91.1
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 2.8e-77 292.0 156 91.7
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.8e-77 292.0 156 91.7
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.8e-77 292.0 156 91.7
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.8e-77 292.0 156 91.7
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.8e-77 292.0 146 95.2
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.8e-77 292.0 149 94.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.7e-77 291.6 149 94.0
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.7e-77 291.6 145 95.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.8e-77 291.2 145 95.9
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.8e-77 291.2 145 95.9
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.2e-77 290.8 156 91.0
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.1e-77 290.4 145 95.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 8.1e-77 290.4 157 91.1
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 8.1e-77 290.4 157 91.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.4e-76 289.7 157 89.8
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.4e-76 289.7 157 89.8
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.4e-76 289.7 153 91.5
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.4e-76 289.7 145 94.5
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.4e-76 289.7 149 93.3
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 2.4e-76 288.9 144 97.2
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.4e-76 288.9 145 94.5
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 3.1e-76 288.5 146 94.5
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.1e-76 288.5 157 90.4
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.1e-76 288.5 148 94.6
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 4.0e-76 288.1 157 89.2
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 4.0e-76 288.1 156 90.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.3e-76 287.7 156 91.0
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.3e-76 287.7 157 89.8
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 6.9e-76 287.3 157 89.2
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 6.9e-76 287.3 157 89.2
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 9.0e-76 287.0 157 88.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 9.0e-76 287.0 144 95.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.2e-75 286.6 145 93.8
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.5e-75 286.2 157 89.8
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 1.5e-75 286.2 150 92.0
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.5e-75 286.2 156 89.1
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.0e-75 285.8 146 93.2
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.0e-75 285.8 157 88.5
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 2.0e-75 285.8 157 88.5
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.0e-75 285.8 155 89.7
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 146 93.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.0e-75 285.8 146 93.2
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.2
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.2
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.4e-75 285.0 157 87.9
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.4e-75 285.0 156 88.5
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 3.4e-75 285.0 157 86.6
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 5.8e-75 284.3 151 90.7
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.8e-75 284.3 145 92.4
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.8e-75 284.3 145 92.4
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 7.6e-75 283.9 144 94.4
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 9.9e-75 283.5 155 86.5
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-74 283.1 146 93.8
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.3e-74 283.1 157 87.9
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.3e-74 283.1 153 86.9
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.7e-74 282.7 145 92.4
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.2e-74 282.3 157 89.2
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 2.2e-74 282.3 144 93.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.9e-74 282.0 146 93.8
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.9e-74 282.0 144 93.1
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 2.9e-74 282.0 145 91.7
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.9e-74 282.0 157 87.3
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.8e-74 281.6 157 86.6
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.8e-74 281.6 157 86.6
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.8e-74 281.6 157 86.6
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.8e-74 281.6 157 86.6
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.8e-74 281.6 157 86.6
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 3.8e-74 281.6 157 86.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.4e-74 280.8 156 86.5
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 8.4e-74 280.4 157 86.0
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 8.4e-74 280.4 157 86.6
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.9e-73 279.3 157 88.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.9e-73 279.3 157 88.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.2e-73 278.5 156 89.1
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 7.1e-73 277.3 157 86.6
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 9.3e-73 276.9 157 86.6
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 9.3e-73 276.9 144 93.1
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 9.3e-73 276.9 144 93.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.2e-72 276.6 146 91.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.2e-72 276.6 146 91.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.7e-72 275.4 157 87.3
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.5e-72 275.0 151 90.1
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 6.0e-72 274.2 157 86.0
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 3.9e-71 271.6 144 89.6
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 5.1e-71 271.2 143 89.5
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 5.1e-71 271.2 143 89.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 6.7e-71 270.8 143 91.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.9e-70 269.2 154 87.0
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.5e-70 268.9 144 87.5
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 5.6e-70 267.7 139 92.1
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.3e-69 266.5 143 88.8
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.4e-68 263.1 137 92.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.4e-68 263.1 135 91.9
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.5e-67 258.1 127 97.6
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.6e-67 257.3 136 92.6
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.0e-66 256.9 124 99.2
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.0e-66 256.9 131 93.9
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.3e-66 256.5 124 98.4
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.3e-66 256.5 129 94.6
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.3e-66 256.5 144 87.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 8.4e-66 253.8 130 93.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.1e-65 253.4 131 91.6
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.4e-65 253.1 125 95.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.4e-65 253.1 125 95.2
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 2.5e-65 252.3 137 90.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 3.2e-65 251.9 131 93.9
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.2e-65 251.5 148 83.8
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.2e-65 251.5 129 92.2
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 5.5e-65 251.1 132 90.9
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 7.1e-65 250.8 124 96.0
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 9.3e-65 250.4 137 89.1
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.7e-64 248.8 159 79.2
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.5e-64 248.4 159 79.2
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 6.0e-64 247.7 137 87.6
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 3.0e-63 245.4 151 78.8
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.9e-63 245.0 141 85.1
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.1e-63 244.6 126 92.9
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.5e-62 243.0 145 84.1
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 3.3e-62 241.9 149 81.9
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.6e-61 239.6 145 75.2
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 4.1e-60 235.0 144 73.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.5e-57 225.7 144 75.0
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 3.2e-57 225.3 152 75.0
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 6.9e-52 207.6 180 60.6
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 9.1e-52 207.2 145 71.7
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 3.4e-51 205.3 103 98.1
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.0e-50 203.8 116 82.8
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.3e-50 203.4 121 80.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 3.2e-49 198.7 103 93.2
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 7.2e-49 197.6 103 93.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.5e-46 189.9 114 77.2
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.4e-43 178.7 87 95.4
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 2.5e-41 172.6 115 79.1
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.7e-37 159.8 80 91.2
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 4.8e-37 158.3 81 93.8
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.4e-36 156.0 79 88.6
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-34 150.6 144 59.0
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.5e-33 144.8 73 95.9
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.8e-29 131.7 77 79.2
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-28 130.6 71 90.1
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 9.1e-28 127.5 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.5e-27 125.2 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.2e-25 117.9 74 78.4
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 8.0e-16 87.8 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 8.9e-15 84.3 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.1e-12 77.4 84 52.4


User provided reference genes

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