Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 4.1e-248 860.9 429 100.0
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 1.9e-213 745.7 425 87.3
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 5.8e-210 734.2 440 83.2
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 2.2e-180 636.0 431 72.6
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 2.1e-175 619.4 419 70.9
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 7.0e-171 604.4 420 69.0
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 9.1e-171 604.0 420 70.5
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 9.1e-171 604.0 420 70.5
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 1.2e-170 603.6 432 65.7
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 1.3e-169 600.1 424 67.7
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 8.5e-169 597.4 428 66.6
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 8.5e-169 597.4 420 67.6
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 1.1e-168 597.0 418 67.9
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 2.5e-168 595.9 424 66.7
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 4.2e-168 595.1 418 67.9
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 4.2e-168 595.1 440 67.5
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 5.5e-168 594.7 418 67.7
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 2.1e-167 592.8 426 67.6
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 2.7e-167 592.4 426 68.5
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 2.7e-167 592.4 429 66.4
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 4.7e-167 591.7 423 67.8
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 6.1e-167 591.3 430 66.0
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.0e-166 590.5 420 67.6
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.0e-166 590.5 421 67.7
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 1.8e-166 589.7 419 66.8
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 3.0e-166 589.0 420 67.6
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 3.9e-166 588.6 422 66.8
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 5.2e-166 588.2 430 65.8
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 6.7e-166 587.8 419 66.6
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.1e-165 587.0 423 67.1
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 3.3e-165 585.5 419 67.3
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 5.7e-165 584.7 419 66.3
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 7.4e-165 584.3 419 67.5
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 7.4e-165 584.3 418 67.9
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 2.2e-164 582.8 420 67.4
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 2.8e-164 582.4 451 63.4
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 2.8e-164 582.4 428 66.8
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 1.4e-163 580.1 428 65.2
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 1.8e-163 579.7 419 66.1
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 4.1e-163 578.6 420 66.4
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 1.2e-162 577.0 418 67.5
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 1.2e-162 577.0 424 66.3
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.6e-162 576.6 413 68.3
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 2.0e-162 576.2 420 66.4
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 2.0e-162 576.2 424 66.5
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 3.5e-162 575.5 419 66.1
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 4.5e-162 575.1 424 66.0
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 5.9e-162 574.7 422 66.4
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 7.7e-162 574.3 458 61.8
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 7.7e-162 574.3 418 67.9
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 7.7e-162 574.3 418 66.7
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.3e-161 573.5 446 63.0
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 1.3e-161 573.5 418 67.0
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.7e-161 573.2 424 65.6
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 2.2e-161 572.8 423 67.8
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 2.2e-161 572.8 423 67.8
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 5.0e-161 571.6 423 65.0
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 5.0e-161 571.6 418 66.7
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 6.5e-161 571.2 422 64.7
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 1.1e-160 570.5 441 65.1
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 5.5e-160 568.2 422 64.9
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 7.2e-160 567.8 418 66.7
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 3.6e-159 565.5 441 64.4
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 1.8e-158 563.1 421 67.9
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 3.0e-158 562.4 423 63.6
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 5.2e-158 561.6 421 65.8
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 8.8e-158 560.8 420 67.1
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.2e-157 560.5 419 66.3
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 2.0e-157 559.7 419 64.7
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 6.3e-156 554.7 424 63.7
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 4.1e-155 552.0 419 65.2
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 7.0e-155 551.2 532 55.8
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 1.2e-154 550.4 418 62.0
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.2e-154 550.4 419 64.9
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 1.6e-154 550.1 474 59.7
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 3.5e-154 548.9 421 63.4
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 3.8e-153 545.4 420 64.3
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 5.0e-153 545.0 420 63.8
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 5.0e-153 545.0 426 62.4
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.1e-152 543.9 419 64.0
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.9e-152 543.1 422 62.6
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 2.5e-152 542.7 423 63.4
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 3.2e-152 542.3 422 61.8
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 4.2e-152 542.0 428 61.9
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 7.2e-152 541.2 421 62.9
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 9.4e-152 540.8 423 62.4
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 2.7e-151 539.3 420 62.9
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 6.1e-151 538.1 422 61.1
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 6.8e-150 534.6 427 61.8
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 8.8e-150 534.3 427 61.8
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 1.2e-149 533.9 427 61.8
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 1.5e-149 533.5 432 61.6
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 2.0e-149 533.1 427 62.1
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 2.6e-149 532.7 420 61.4
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 3.4e-149 532.3 424 61.1
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 1.1e-147 527.3 426 62.2
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 1.2e-143 513.8 418 60.3
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 4.0e-142 508.8 422 59.2
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 4.1e-139 498.8 416 59.4
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 7.8e-138 494.6 355 68.2
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 7.8e-138 494.6 422 57.8
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 8.6e-137 491.1 423 56.5
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 3.1e-134 482.6 430 57.2
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 7.0e-131 471.5 334 67.7
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 2.0e-125 453.4 434 55.3
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 3.4e-125 452.6 422 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 2.9e-124 449.5 421 54.2
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.4e-123 447.2 422 52.6
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 1.7e-121 440.3 350 63.7
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 8.3e-116 421.4 292 70.2
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 1.6e-114 417.2 424 51.2
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 4.6e-114 415.6 427 48.7
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 1.2e-109 401.0 425 50.6
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 1.3e-103 380.9 271 66.1
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 1.1e-96 357.8 246 68.3
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 1.1e-94 351.3 425 45.6
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 3.8e-84 316.2 421 43.5
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 1.6e-79 300.8 196 73.5
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 7.2e-67 258.8 184 69.0
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 1.6e-66 257.7 245 53.9
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 1.4e-57 228.0 291 45.7
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 6.5e-44 182.6 137 63.5
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 2.8e-26 124.0 93 64.5
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 6.3e-23 112.8 100 53.0
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 1.8e-22 111.3 95 53.7
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.2e-21 108.6 88 60.2
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 8.6e-12 75.9 399 23.1
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 1.8e-09 68.2 96 44.8


User provided reference genes

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