Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 0.0e+00 1145.2 586 100.0
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.0e-246 854.7 614 74.3
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 7.6e-245 850.5 609 74.9
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.4e-235 819.7 614 74.6
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 9.6e-232 807.0 581 74.0
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 5.3e-230 801.2 612 72.7
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.4e-224 780.8 583 72.4
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.2e-219 765.0 546 74.9
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.9e-212 742.3 546 73.6
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 3.3e-208 728.8 546 74.0
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 3.0e-201 705.7 627 64.8
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.4e-193 680.2 619 63.5
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 2.6e-192 676.0 613 63.3
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 2.0e-189 666.4 630 62.1
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 3.2e-187 659.1 623 59.1
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 7.5e-184 647.9 653 59.9
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 9.8e-184 647.5 623 61.5
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 4.9e-183 645.2 631 59.9
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 8.3e-183 644.4 627 60.0
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.1e-182 644.0 613 59.1
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 9.2e-182 641.0 618 60.4
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.2e-181 640.6 639 59.3
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.5e-181 639.0 656 56.7
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 1.3e-180 637.1 619 58.6
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 1.1e-179 634.0 494 68.6
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 3.3e-179 632.5 656 57.9
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.3e-179 631.3 613 58.7
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 7.3e-179 631.3 625 57.8
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.7e-178 628.6 638 57.5
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.4e-177 627.1 625 56.8
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 2.3e-177 626.3 646 57.6
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 4.0e-177 625.5 695 56.0
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 6.8e-177 624.8 632 57.9
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 1.2e-176 624.0 636 58.2
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 3.4e-176 622.5 663 55.5
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 2.2e-175 619.8 620 58.5
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 5.9e-173 611.7 645 56.3
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.0e-172 610.9 656 56.7
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 1.7e-172 610.1 639 56.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 6.6e-172 608.2 636 57.1
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 6.2e-170 601.7 654 57.2
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 6.2e-170 601.7 645 55.7
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.0e-169 600.9 631 56.7
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.3e-169 599.7 627 55.8
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 3.1e-169 599.4 659 56.6
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 4.4e-168 595.5 653 55.3
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 3.7e-167 592.4 651 54.2
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 3.7e-167 592.4 628 56.8
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 4.6e-165 585.5 623 55.2
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.0e-164 584.3 633 54.5
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.3e-164 583.9 632 54.4
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 2.3e-164 583.2 631 55.0
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.9e-164 582.4 661 54.9
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 6.6e-164 581.6 632 55.1
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 1.1e-163 580.9 647 55.5
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 4.3e-163 578.9 616 54.7
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 8.1e-162 574.7 639 53.8
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-161 573.9 661 54.6
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 2.3e-161 573.2 447 69.1
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-160 570.5 636 55.0
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 2.0e-160 570.1 480 62.9
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 2.6e-160 569.7 637 55.1
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.9e-159 565.5 641 53.2
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 7.1e-158 561.6 401 72.3
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 2.7e-157 559.7 396 73.5
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 3.9e-156 555.8 637 54.0
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 8.6e-156 554.7 606 54.1
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 8.9e-153 544.7 572 57.9
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 2.0e-152 543.5 640 53.0
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 3.8e-151 539.3 633 51.8
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 8.4e-151 538.1 620 53.1
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 2.8e-146 523.1 667 49.8
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 4.0e-145 519.2 609 51.7
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 5.8e-144 515.4 613 52.2
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 8.4e-143 511.5 610 50.3
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 8.4e-143 511.5 540 56.5
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 2.7e-141 506.5 414 63.5
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-141 506.5 619 52.8
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 7.8e-141 505.0 617 51.9
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 6.6e-140 501.9 677 48.2
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 1.5e-136 490.7 647 49.1
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 9.9e-136 488.0 647 48.2
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.2e-133 481.1 423 59.8
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 3.3e-131 473.0 615 48.1
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 7.4e-131 471.9 473 56.9
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 2.1e-130 470.3 463 60.0
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 9.3e-126 454.9 601 48.4
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.0e-124 451.4 475 56.6
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.6e-122 444.1 536 50.9
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 3.8e-119 433.0 467 54.8
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 2.5e-118 430.3 587 47.4
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 9.3e-118 428.3 557 48.8
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 4.6e-117 426.0 364 62.1
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 3.9e-116 422.9 582 47.3
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 3.9e-116 422.9 268 77.2
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.1e-110 404.8 594 46.1
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 2.7e-109 400.2 566 47.2
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 7.4e-107 392.1 544 46.3
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 3.7e-106 389.8 457 51.6
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 1.1e-105 388.3 441 53.5
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.7e-103 380.9 499 44.5
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 5.1e-100 369.4 496 43.3
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 2.2e-90 337.4 469 48.6
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.4e-89 334.7 352 56.0
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.4e-89 334.0 766 35.9
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 4.7e-85 319.7 527 45.0
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 8.0e-85 318.9 191 82.2
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.0e-76 292.0 411 47.2
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.6e-75 287.3 270 54.1
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 4.4e-75 286.6 265 60.8
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 3.7e-74 283.5 169 80.5
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 8.6e-71 272.3 161 80.1
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.2e-67 261.9 493 36.5
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 3.4e-67 260.4 161 77.6
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.1e-65 255.4 160 76.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 1.4e-65 255.0 214 65.4
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 1.8e-65 254.6 161 74.5
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 8.6e-55 219.2 123 82.1
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 8.6e-55 219.2 419 41.8
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.3e-52 211.1 333 46.8
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 5.2e-52 209.9 399 40.4
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 3.4e-51 207.2 309 46.3
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 4.4e-51 206.8 424 37.3
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 5.8e-51 206.5 301 45.8
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 5.8e-51 206.5 266 47.4
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 2.7e-48 197.6 151 65.6
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-43 181.4 183 57.4
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 2.6e-43 181.0 319 37.6
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 4.9e-42 176.8 192 55.7
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 4.4e-35 153.7 287 40.4
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 4.9e-34 150.2 239 40.6
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 4.9e-34 150.2 239 40.6
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.4e-33 146.7 116 66.4
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.2e-32 145.6 138 62.3
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 2.1e-32 144.8 415 29.9
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.7e-31 141.7 227 37.0
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 1.8e-28 131.7 248 39.1
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.2e-28 130.2 106 67.0
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 2.0e-27 128.3 270 31.5
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 2.6e-27 127.9 167 44.9
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.4e-26 123.2 68 89.7
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.9e-25 121.7 68 88.2
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 7.1e-25 119.8 69 81.2
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-23 115.5 92 65.2
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 4.3e-22 110.5 116 56.0
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 7.3e-22 109.8 95 65.3
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-20 104.0 92 58.7
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-20 104.0 92 58.7
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-20 104.0 92 58.7
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-20 104.0 92 58.7
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 5.3e-20 103.6 176 40.3
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.5e-19 102.1 69 66.7
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 3.4e-19 100.9 83 62.7
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 9.9e-19 99.4 85 60.0
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.1e-15 87.0 169 42.6
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 6.7e-15 86.7 127 40.2
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 5.6e-14 83.6 81 55.6
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 8.1e-13 79.7 61 62.3
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-12 79.0 51 82.4
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 5.8e-11 73.6 242 28.9
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 9.9e-11 72.8 52 73.1
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.8e-10 70.9 209 35.9
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 4.9e-10 70.5 52 71.2
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 4.2e-09 67.4 46 60.9
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 4.2e-09 67.4 46 60.9
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 1.2e-08 65.9 46 58.7
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 6.0e-08 63.5 39 74.4
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 7.9e-08 63.2 36 77.8
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 3.0e-07 61.2 40 75.0
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 6.7e-07 60.1 51 68.6
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 7.4e-06 56.6 52 51.9


User provided reference genes

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