Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.8e-201 705.7 349 100.0
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 3.7e-170 601.7 350 86.3
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 8.2e-170 600.5 349 86.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.5e-168 596.3 350 85.7
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.8e-132 476.5 261 90.0
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 2.4e-129 466.1 366 66.4
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 4.1e-129 465.3 369 68.3
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 5.0e-127 458.4 362 66.6
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 7.2e-126 454.5 378 64.8
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.4e-124 450.3 364 65.7
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.8e-124 449.9 362 64.9
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.0e-124 449.1 357 66.1
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 3.0e-124 449.1 362 65.7
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.6e-123 446.0 365 64.4
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 4.9e-122 441.8 335 70.4
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 4.9e-122 441.8 366 65.8
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 4.9e-122 441.8 371 64.7
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.1e-121 440.7 385 61.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.1e-121 440.7 385 61.8
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.2e-120 437.2 357 65.5
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 2.0e-120 436.4 315 71.4
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 2.7e-120 436.0 351 65.2
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 5.9e-120 434.9 351 64.7
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 5.9e-120 434.9 307 70.7
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 2.3e-119 433.0 280 76.1
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.9e-119 432.6 370 63.5
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 2.9e-119 432.6 370 62.7
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 8.6e-119 431.0 359 62.7
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 1.9e-118 429.9 370 62.4
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.5e-118 429.5 285 75.1
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 4.3e-118 428.7 355 63.1
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 7.3e-118 427.9 368 61.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 6.1e-117 424.9 347 63.1
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.0e-116 424.1 344 64.0
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.4e-116 423.7 293 72.0
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 6.8e-116 421.4 367 61.9
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.2e-115 420.6 344 63.7
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.5e-115 420.2 286 72.7
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 4.4e-115 418.7 353 62.0
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 9.8e-115 417.5 347 62.5
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.3e-114 417.2 260 78.5
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.3e-114 417.2 293 70.6
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 2.9e-114 416.0 383 58.5
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 6.4e-114 414.8 353 64.0
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.1e-113 414.1 322 67.7
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.1e-113 414.1 364 61.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.4e-113 413.7 364 61.0
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.4e-113 412.9 366 61.2
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 4.1e-113 412.1 362 59.4
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 7.0e-113 411.4 349 63.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.6e-112 410.2 383 58.5
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 2.7e-112 409.5 344 62.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 3.5e-112 409.1 351 63.8
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 5.9e-112 408.3 335 64.2
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 1.0e-111 407.5 363 59.8
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.0e-111 407.5 360 60.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.3e-111 407.1 354 61.3
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.7e-111 406.8 304 67.4
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.7e-111 406.8 343 63.0
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.7e-111 406.8 362 61.6
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 6.6e-111 404.8 344 62.5
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 1.1e-110 404.1 329 66.0
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 1.5e-110 403.7 287 71.8
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.5e-110 403.7 359 61.3
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 3.3e-110 402.5 353 62.0
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 5.6e-110 401.7 363 60.3
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 5.6e-110 401.7 303 69.0
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 5.6e-110 401.7 358 59.5
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 9.5e-110 401.0 275 73.5
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.1e-109 399.8 369 58.5
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 8.9e-108 394.4 357 61.1
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-107 393.7 265 72.5
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.5e-107 393.7 273 72.2
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.5e-107 393.7 378 57.7
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.4e-107 392.5 313 67.1
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 5.8e-107 391.7 321 66.0
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 3.2e-105 386.0 350 60.0
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 7.0e-105 384.8 365 58.1
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.2e-104 384.0 351 60.7
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.3e-103 380.6 340 61.2
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.1e-102 377.5 285 66.7
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.5e-102 377.1 365 57.3
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.5e-102 374.4 373 55.8
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-101 374.0 274 67.9
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 6.2e-101 371.7 324 59.6
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.8e-100 370.2 388 52.6
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 3.5e-96 355.9 282 62.4
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 1.4e-89 334.0 347 55.3
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.3e-87 327.4 237 68.4
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 6.2e-85 318.5 271 62.7
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 6.2e-85 318.5 283 56.5
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.9e-78 297.0 300 51.0
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.3e-76 288.9 359 49.0
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 6.9e-76 288.5 246 57.7
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.0e-75 287.0 226 61.5
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.5e-70 270.0 267 48.3
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.3e-66 257.7 274 53.6
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.2e-66 256.9 272 54.4
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.9e-66 256.5 373 44.0
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 3.8e-66 256.1 272 54.4
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.3e-65 251.5 239 51.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 3.5e-64 249.6 241 50.2
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.3e-63 246.9 201 63.2
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.9e-58 229.2 182 63.2
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 2.6e-51 206.8 204 55.9
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.9e-50 203.4 113 80.5
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 8.5e-50 201.8 207 47.3
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 3.6e-48 196.4 256 37.9
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.7e-45 187.6 180 50.6
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 9.1e-44 181.8 120 75.0
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.5e-38 164.5 220 41.4
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 5.7e-30 136.0 125 56.0
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 3.7e-29 133.3 206 42.7
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.6e-27 127.1 99 65.7
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 5.9e-27 125.9 137 54.7
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 8.5e-26 122.1 147 51.0
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.2e-24 118.2 75 77.3
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 2.4e-20 104.0 126 51.6
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 3.6e-16 90.1 69 66.7
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 6.1e-16 89.4 198 30.8
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.4e-12 77.4 105 42.9
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 5.5e-09 66.2 163 28.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 9.5e-09 65.5 181 26.5
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.2e-08 65.1 143 32.2
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.2e-08 65.1 143 32.2
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 1.2e-08 65.1 143 32.2
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.6e-08 64.7 143 28.7
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.6e-08 64.7 143 29.4
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.1e-08 64.3 143 30.8
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 2.1e-08 64.3 143 30.1
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 3.6e-08 63.5 143 30.1
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 4.7e-08 63.2 143 29.4
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 6.1e-08 62.8 134 29.9
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 6.1e-08 62.8 143 28.7
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 8.0e-08 62.4 156 27.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.0e-07 62.0 143 30.1
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 1.0e-07 62.0 218 23.4
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.0e-07 62.0 143 29.4
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 1.0e-07 62.0 160 28.1
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 1.4e-07 61.6 143 29.4
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.4e-07 61.6 164 26.8
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 1.8e-07 61.2 151 28.5
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.8e-07 61.2 170 26.5
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.8e-07 61.2 147 29.3
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 3.0e-07 60.5 142 30.3
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 4.0e-07 60.1 144 30.6
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 5.2e-07 59.7 148 30.4
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 6.8e-07 59.3 144 30.6
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 6.8e-07 59.3 177 29.4
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 2.6e-06 57.4 142 28.2
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 2.6e-06 57.4 142 28.9
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 2.6e-06 57.4 142 28.2
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 2.6e-06 57.4 143 23.8
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.4e-06 57.0 153 25.5
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 3.4e-06 57.0 144 29.2
Duzib268G0722 Durio zibethinus HOM05D006539 ORTHO05D186223 4.4e-06 56.6 32 84.4
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 7.5e-06 55.8 142 28.2
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 9.8e-06 55.5 170 26.5
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 9.8e-06 55.5 170 26.5
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 9.8e-06 55.5 170 26.5
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 9.8e-06 55.5 142 27.5


User provided reference genes

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