Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 4.9e-162 574.7 356 100.0
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.6e-144 515.0 345 83.5
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.1e-143 511.5 349 88.3
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.8e-141 505.8 345 88.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 3.6e-141 505.4 346 82.4
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.4e-139 498.8 345 90.4
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.7e-138 496.5 358 89.1
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 5.4e-137 491.5 347 80.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.1e-134 483.8 345 89.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.8e-133 478.4 345 88.7
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.5e-131 471.9 345 75.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.5e-131 471.9 345 84.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 8.4e-130 467.6 345 73.6
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 5.5e-129 464.9 345 80.3
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.9e-127 458.8 346 73.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.9e-127 458.8 345 73.0
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.6e-125 453.4 345 73.9
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.8e-125 451.8 344 73.0
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 8.2e-125 451.1 345 72.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 5.3e-124 448.4 335 73.1
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.0e-123 446.4 337 72.1
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 4.5e-123 445.3 345 71.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.3e-122 443.7 345 71.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.4e-121 440.3 345 70.1
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.9e-121 439.9 345 71.9
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.2e-121 439.1 337 70.0
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 4.2e-121 438.7 345 70.7
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.5e-121 438.3 345 69.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 5.5e-121 438.3 345 70.1
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.2e-121 438.0 345 70.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.2e-120 437.2 345 71.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.7e-120 436.0 345 71.3
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 3.5e-120 435.6 347 69.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 6.1e-120 434.9 345 67.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.0e-119 434.1 345 70.4
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 3.0e-119 432.6 345 69.6
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 3.9e-119 432.2 347 73.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.7e-119 431.0 345 69.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-118 429.5 345 69.0
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.3e-118 429.1 345 69.0
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.7e-118 428.3 345 69.0
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 7.4e-118 427.9 345 69.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.2e-117 426.4 345 72.8
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.7e-117 425.6 341 70.1
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.3e-117 424.9 342 69.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 8.2e-117 424.5 345 69.3
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 8.2e-117 424.5 335 70.7
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.4e-116 423.7 345 68.4
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.8e-116 423.3 372 66.7
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 4.1e-116 422.2 345 67.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.3e-116 421.8 345 67.5
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 9.0e-116 421.0 345 70.4
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 9.0e-116 421.0 345 67.5
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.5e-115 420.2 345 76.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.4e-115 419.1 343 69.7
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.4e-115 419.1 345 66.7
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.3e-114 417.2 347 66.3
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 2.2e-114 416.4 345 66.7
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.2e-114 416.4 345 74.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.8e-114 415.6 345 66.1
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.0e-114 415.2 345 67.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.0e-114 415.2 345 66.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.5e-113 412.9 345 68.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.2e-113 412.5 345 72.8
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.2e-113 411.4 345 77.1
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.1e-112 409.8 319 72.7
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.7e-112 409.5 341 74.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.9e-112 407.9 340 75.3
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.8e-111 406.8 345 69.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.3e-110 402.5 319 76.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.3e-110 402.5 345 66.7
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.2e-109 399.8 345 64.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.3e-109 398.3 396 59.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 6.3e-109 398.3 345 64.9
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.4e-108 396.4 315 69.8
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 7.7e-107 391.3 328 65.9
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 5.5e-105 385.2 345 72.2
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.7e-104 382.1 345 71.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.7e-104 382.1 345 71.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.8e-103 380.2 337 70.0
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.8e-103 380.2 347 73.5
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.0e-103 379.4 343 63.8
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 5.7e-102 375.2 345 71.9
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 9.7e-102 374.4 345 72.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.3e-101 374.0 331 64.4
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.3e-101 374.0 343 63.3
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.8e-101 372.9 254 76.4
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.8e-101 372.9 345 69.9
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.8e-100 370.2 338 69.8
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 8.5e-98 361.3 345 67.5
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 3.2e-97 359.4 366 65.6
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.1e-96 356.7 345 68.4
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-94 350.9 345 59.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-94 350.5 345 59.7
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.3e-93 345.1 347 57.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.5e-91 339.3 251 69.7
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.0e-90 337.8 346 67.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.3e-90 337.4 346 57.2
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.5e-90 335.1 251 71.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.1e-89 334.3 346 57.8
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.6e-88 330.5 373 54.7
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.6e-88 330.5 345 55.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 4.7e-88 328.9 345 63.5
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 6.1e-88 328.6 345 67.5
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 2.0e-86 323.6 225 76.0
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.3e-85 320.9 346 63.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.1e-84 316.2 348 54.3
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.9e-83 312.0 345 54.8
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.9e-82 309.7 329 63.2
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 8.5e-82 308.1 332 64.5
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.5e-81 306.6 350 54.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 5.5e-81 305.4 333 54.1
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.7e-80 303.1 349 53.6
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-78 297.7 348 53.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.4e-76 290.0 319 57.1
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 4.5e-75 285.8 345 61.7
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 5.9e-75 285.4 252 63.5
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.3e-74 283.5 326 52.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 8.6e-74 281.6 346 50.9
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 8.6e-74 281.6 346 50.9
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.3e-73 279.6 344 50.9
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 9.5e-73 278.1 346 50.3
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-72 277.7 324 54.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.1e-72 276.9 340 52.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 8.0e-72 275.0 346 49.7
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.4e-71 274.2 347 51.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.8e-71 273.9 251 62.5
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.5e-70 270.8 348 50.0
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 6.4e-69 265.4 346 50.6
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.5e-65 253.4 346 48.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.5e-65 251.5 345 45.2
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.0e-63 248.1 339 46.6
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 8.9e-63 245.0 251 58.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-62 244.2 346 47.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.8e-62 242.3 343 46.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 8.3e-61 238.4 341 46.6
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.3e-61 238.4 303 52.1
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.4e-60 237.7 344 45.9
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.0e-59 233.8 341 46.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 4.6e-59 232.6 357 54.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.9e-57 227.3 355 53.2
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 9.5e-57 224.9 289 48.4
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-56 224.6 343 45.5
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.8e-56 223.4 340 45.6
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.7e-53 214.2 339 46.9
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 7.8e-51 205.3 355 36.3
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.0e-50 204.9 252 48.8
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-50 204.5 285 48.4
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 6.6e-50 202.2 322 41.9
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 7.3e-49 198.7 285 47.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.6e-48 197.6 296 46.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.8e-48 196.8 303 45.5
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 6.2e-48 195.7 270 48.1
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.3e-47 193.7 185 54.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.5e-46 191.0 343 37.0
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 6.0e-43 179.1 290 42.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.9e-37 159.5 158 78.5
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.2e-36 156.8 306 39.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 8.7e-34 148.7 138 66.7
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.3e-33 146.7 219 46.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 7.3e-33 145.6 202 46.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 3.2e-28 130.2 176 48.3
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.5e-25 121.3 321 34.3
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 4.3e-25 119.8 152 51.3
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.3e-21 108.2 281 34.2
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.3e-17 93.6 290 47.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.4e-15 87.4 53 88.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 4.0e-15 86.7 290 33.4
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 7.6e-14 82.4 52 82.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.2e-11 75.1 172 41.3
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.5e-11 73.6 282 30.5
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.5e-11 73.6 282 30.5
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 6.3e-08 62.8 42 78.6
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.4e-07 61.6 42 76.2
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 3.1e-07 60.5 41 78.0


User provided reference genes

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