Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 2682.9 1377 100.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2273.4 1375 85.2
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2261.5 1375 85.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2261.1 1375 84.8
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2256.5 1375 84.8
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1683.7 1384 63.9
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1679.1 1384 63.4
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1678.7 1377 63.4
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 1662.1 1397 63.1
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1659.8 1391 62.8
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1650.2 1390 63.1
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1646.3 1389 63.1
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1628.2 1392 62.1
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1605.1 1384 60.8
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1605.1 1389 60.8
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1604.3 1395 60.6
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1561.2 1431 58.7
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1551.6 1394 60.1
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1546.6 1396 58.9
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1546.2 1392 59.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1541.2 1394 59.8
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1533.1 1391 60.0
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1525.8 1387 58.6
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1517.7 1372 59.8
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1500.0 1420 57.9
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1481.5 1393 57.6
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1480.3 1402 57.9
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1471.8 1390 56.9
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1463.7 1606 52.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1448.3 1388 55.0
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1439.9 1391 55.5
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1438.7 1392 55.5
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1437.2 1392 55.6
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1431.4 1389 55.4
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1421.4 1254 59.6
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1420.6 1417 54.6
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1420.2 1394 55.7
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1413.3 1352 55.8
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1403.7 1352 55.5
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1398.6 1391 54.9
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1397.1 1392 54.5
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1392.9 1391 55.1
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1388.6 1472 51.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1379.4 1391 53.8
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1378.2 1396 54.4
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1363.2 1390 52.9
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1345.5 1488 50.2
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1345.1 1388 52.4
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1340.5 1392 52.9
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1334.3 1392 52.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1327.8 1392 51.9
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1325.1 1390 52.2
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1320.1 1395 52.0
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1312.7 1391 52.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1311.6 1386 49.9
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1311.2 1455 50.5
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1304.3 1397 51.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1303.1 1400 51.6
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1295.0 1400 51.6
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1293.5 1397 51.6
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1281.2 1389 50.9
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1271.1 1433 49.8
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1268.8 1392 49.8
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1268.1 1405 50.5
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1267.3 1399 50.0
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1263.8 1396 50.0
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1262.3 1368 50.4
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1261.5 1391 50.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1251.5 1388 50.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1241.1 1389 50.3
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1229.9 1393 49.5
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1226.5 1502 46.7
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1217.6 1386 48.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1185.2 1385 47.7
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1179.9 1415 47.8
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1152.1 1387 47.2
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1149.8 1392 47.9
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1149.4 1381 47.8
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1098.2 1236 49.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 9.4e-312 1074.7 1383 46.3
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 1.2e-304 1050.4 1406 44.4
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.5e-304 1050.0 1216 48.2
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 2.6e-288 996.1 1373 44.4
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.0e-284 984.2 1084 48.7
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 7.2e-278 961.4 1014 51.3
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.4e-227 793.1 738 56.0
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 8.3e-226 788.5 738 55.6
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 1.0e-223 781.6 1365 37.7
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.3e-223 781.2 1329 37.4
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 3.5e-208 729.9 1374 35.8
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.9e-202 709.5 770 53.2
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.3e-183 647.5 797 49.7
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.7e-176 624.0 545 60.2
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 2.0e-163 581.3 1448 29.6
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.7e-162 578.2 1468 28.5
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.8e-143 515.0 391 65.7
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.3e-138 498.0 1435 27.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.5e-134 485.3 419 61.8
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 8.6e-130 469.5 606 45.0
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.0e-114 419.5 766 36.6
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.2e-109 401.7 653 37.7
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 4.7e-104 384.0 1586 23.8
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 7.3e-97 360.1 637 35.3
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 5.4e-92 344.0 327 60.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.0e-82 313.2 346 54.9
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 3.6e-59 235.0 208 58.7
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 2.3e-58 232.3 475 30.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-56 226.1 900 24.7
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.4e-52 213.0 136 74.3
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.7e-43 181.4 410 32.4
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 4.4e-41 174.9 189 54.0
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 3.4e-33 148.7 224 41.1
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 9.8e-33 147.1 152 48.7
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.6e-30 139.8 698 22.8
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 2.9e-29 135.6 125 51.2
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.7e-22 112.5 268 30.2
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.3e-21 110.2 112 49.1
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.9e-20 106.3 138 46.4
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.6e-19 103.2 165 39.4
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 6.1e-19 101.3 110 50.0
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.0e-18 98.6 236 33.1
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.3e-16 93.6 113 50.4
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.2e-16 92.8 134 43.3
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 9.2e-15 87.4 142 41.5
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.6e-14 86.7 61 68.9
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 8.0e-11 74.3 75 53.3
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 3.1e-10 72.4 84 46.4
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 2.6e-09 69.3 61 59.0
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.7e-08 66.6 67 53.7
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 4.9e-08 65.1 106 42.5
CARHR053140 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.2e-06 60.5 77 46.8


User provided reference genes

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