Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib235G0954 Durio zibethinus HOM05D005670 ORTHO05D007612 3.0e-113 411.8 197 100.0
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 4.2e-54 215.3 193 62.7
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 3.0e-52 209.1 194 59.8
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 1.3e-50 203.8 199 57.8
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 2.8e-50 202.6 199 57.8
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 1.1e-49 200.7 199 57.3
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 2.0e-48 196.4 184 60.3
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 8.4e-47 191.0 191 57.6
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 2.5e-46 189.5 189 57.1
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 7.1e-46 188.0 195 54.4
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 9.3e-46 187.6 197 52.3
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 2.3e-44 183.0 191 50.8
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 5.1e-44 181.8 189 52.4
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 8.7e-44 181.0 195 51.8
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 1.1e-43 180.6 196 53.1
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 1.9e-43 179.9 189 53.4
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 1.9e-43 179.9 195 52.8
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 4.3e-43 178.7 189 50.8
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 5.7e-43 178.3 195 51.3
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 5.7e-43 178.3 195 51.8
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 9.6e-43 177.6 193 51.8
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 1.3e-42 177.2 189 51.3
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 2.8e-42 176.0 189 50.3
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 2.8e-42 176.0 195 53.3
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 3.7e-42 175.6 188 52.7
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 3.7e-42 175.6 187 49.2
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 4.8e-42 175.3 187 49.7
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 4.8e-42 175.3 180 52.2
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 4.8e-42 175.3 191 52.4
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 6.2e-42 174.9 197 48.7
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 6.2e-42 174.9 198 50.5
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 8.2e-42 174.5 191 49.2
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 8.2e-42 174.5 191 50.8
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 1.4e-41 173.7 189 51.9
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 1.8e-41 173.3 188 51.6
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 1.8e-41 173.3 188 51.6
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 1.8e-41 173.3 186 50.5
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 1.8e-41 173.3 190 53.2
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 1.8e-41 173.3 186 50.5
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 1.8e-41 173.3 190 49.5
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 2.4e-41 172.9 192 51.0
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 3.1e-41 172.6 195 48.7
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 3.1e-41 172.6 186 49.5
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 3.1e-41 172.6 198 48.0
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 4.0e-41 172.2 186 50.5
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 5.3e-41 171.8 188 51.6
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 5.3e-41 171.8 188 51.6
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 6.9e-41 171.4 189 49.7
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 9.0e-41 171.0 197 48.2
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 1.2e-40 170.6 195 49.7
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 1.2e-40 170.6 186 50.0
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 1.2e-40 170.6 186 49.5
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 1.2e-40 170.6 191 49.2
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 1.5e-40 170.2 197 47.7
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 1.5e-40 170.2 189 48.1
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 2.0e-40 169.9 191 50.8
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 2.0e-40 169.9 190 48.9
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 2.6e-40 169.5 195 46.7
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 2.6e-40 169.5 196 50.5
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 2.6e-40 169.5 191 49.7
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 3.4e-40 169.1 188 50.5
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 4.5e-40 168.7 195 47.2
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 4.5e-40 168.7 197 47.2
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 5.8e-40 168.3 197 48.7
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 1.0e-39 167.5 197 47.2
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 1.0e-39 167.5 191 51.3
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 1.3e-39 167.2 189 48.7
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 1.3e-39 167.2 191 47.1
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 1.7e-39 166.8 197 47.7
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.9e-39 166.0 188 51.6
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 2.9e-39 166.0 191 49.2
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 2.9e-39 166.0 195 47.7
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 5.0e-39 165.2 191 49.2
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 5.0e-39 165.2 189 49.2
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 8.4e-39 164.5 197 48.7
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 8.4e-39 164.5 191 49.2
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 8.4e-39 164.5 191 49.2
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 8.4e-39 164.5 195 48.2
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 1.1e-38 164.1 189 49.2
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 1.1e-38 164.1 191 49.7
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 1.9e-38 163.3 192 50.5
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 3.2e-38 162.5 192 46.9
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 5.5e-38 161.8 186 48.9
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 1.2e-37 160.6 191 50.8
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 1.2e-37 160.6 189 48.1
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 1.6e-37 160.2 191 48.7
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 1.3e-36 157.1 186 48.4
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 1.8e-36 156.8 186 46.2
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 2.3e-36 156.4 185 50.3
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 2.3e-36 156.4 191 50.3
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 5.1e-36 155.2 196 44.9
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 3.7e-34 149.1 193 47.2
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 4.8e-34 148.7 184 45.7
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 1.8e-33 146.7 185 48.1
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 4.1e-33 145.6 151 51.0
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 6.9e-33 144.8 242 42.1
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 2.9e-31 139.4 154 49.4
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 2.1e-29 133.3 189 38.1
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 3.6e-29 132.5 183 39.3
HPP92_014748 Vanilla planifolia HOM05D005670 ORTHO05D007612 7.9e-29 131.3 170 42.9
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 6.7e-28 128.3 197 39.1
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.0e-27 126.7 150 46.7
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 3.3e-27 125.9 185 38.4
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 3.3e-27 125.9 185 38.4
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 1.3e-26 124.0 198 37.4
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 4.8e-26 122.1 186 38.7
Zm00001eb137210 Zea mays HOM05D005670 ORTHO05D007612 7.7e-24 114.8 76 64.5
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 1.7e-23 113.6 71 73.2
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 7.9e-21 104.8 189 37.6
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.9e-20 102.4 187 37.4
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 3.9e-20 102.4 177 35.0
Zm00001eb374970 Zea mays HOM05D005670 ORTHO05D007612 2.8e-18 96.3 186 34.9
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 2.0e-16 90.1 71 52.1
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 2.6e-16 89.7 189 33.9
FvH4_5g20980 Fragaria vesca HOM05D005670 ORTHO05D007612 3.8e-15 85.9 71 56.3
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 3.0e-12 76.3 43 79.1
Eucgr.E03116 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.1e-11 74.3 69 49.3
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 4.1e-09 65.9 128 31.2
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 5.3e-09 65.5 196 29.6


User provided reference genes

Program Settings