Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 4.5e-189 664.5 339 100.0
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 4.3e-176 621.3 339 92.9
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.1e-174 616.7 339 92.3
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.9e-174 614.0 339 91.7
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.6e-173 612.1 336 92.0
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 5.5e-171 604.4 339 89.1
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 5.7e-144 514.6 337 75.1
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 9.5e-139 497.3 344 74.1
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.6e-138 496.5 338 73.1
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 3.0e-137 492.3 342 72.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 6.8e-137 491.1 339 72.6
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 6.8e-137 491.1 339 75.5
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.5e-136 490.0 336 73.2
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.5e-136 490.0 340 73.2
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.4e-136 488.8 333 73.6
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 9.8e-136 487.3 336 72.9
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 6.3e-135 484.6 337 74.2
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 2.7e-133 479.2 338 71.0
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 4.5e-133 478.4 343 70.3
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 4.5e-133 478.4 337 69.4
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 5.9e-133 478.0 342 71.9
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 7.8e-133 477.6 335 69.3
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.0e-132 477.2 335 70.4
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.3e-132 476.1 336 73.2
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.3e-132 476.1 319 72.7
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.9e-132 475.7 339 69.6
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.9e-132 475.7 344 72.4
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 5.0e-132 474.9 337 69.1
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 6.6e-132 474.6 335 69.9
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.5e-131 473.4 339 70.5
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-131 473.4 344 69.5
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.5e-131 473.4 339 70.2
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.9e-131 473.0 339 69.9
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.9e-131 473.0 345 67.8
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.5e-131 472.6 344 69.5
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 2.5e-131 472.6 334 69.8
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 3.3e-131 472.2 339 69.3
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 5.6e-131 471.5 339 69.0
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-130 470.3 345 67.8
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 2.1e-130 469.5 342 68.7
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 2.8e-130 469.2 339 68.1
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.3e-129 466.1 339 68.7
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 9.8e-128 460.7 340 67.1
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 3.7e-127 458.8 339 67.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 3.7e-127 458.8 339 67.0
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.9e-127 458.4 339 66.7
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 8.3e-127 457.6 368 63.9
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.4e-126 456.8 344 67.4
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.6e-125 453.4 329 68.4
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 6.0e-125 451.4 337 68.0
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.0e-124 448.4 341 64.8
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.6e-124 448.0 341 64.8
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 5.6e-123 444.9 337 66.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.6e-123 444.9 341 64.8
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.6e-122 443.4 341 64.5
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 4.7e-122 441.8 341 64.2
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.0e-122 441.0 326 66.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 2.3e-121 439.5 337 66.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.2e-120 437.2 339 65.5
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 3.4e-120 435.6 342 64.6
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 3.7e-119 432.2 338 65.4
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 4.9e-119 431.8 334 65.0
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 6.4e-119 431.4 330 66.1
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 6.4e-119 431.4 336 64.9
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.1e-118 430.6 333 65.5
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.4e-118 430.3 341 64.8
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.9e-118 429.9 339 66.1
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.1e-118 428.7 341 64.8
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 5.4e-118 428.3 332 65.7
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.6e-117 426.8 340 64.1
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.1e-117 426.4 339 64.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 3.5e-117 425.6 320 65.0
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 4.6e-117 425.2 340 63.2
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 6.0e-117 424.9 340 62.9
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 7.8e-117 424.5 332 63.0
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.3e-116 422.9 339 63.7
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.3e-116 422.9 340 62.6
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 6.6e-116 421.4 339 63.4
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.6e-116 421.4 329 63.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.9e-115 419.9 319 65.5
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.5e-115 419.5 340 62.6
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 2.5e-115 419.5 317 67.8
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 4.3e-115 418.7 339 64.3
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 7.3e-115 417.9 339 62.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.6e-114 415.6 326 62.9
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 6.2e-114 414.8 319 65.2
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.4e-113 413.7 340 62.1
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 4.0e-113 412.1 338 62.7
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 8.9e-113 411.0 338 63.6
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 3.4e-112 409.1 318 64.5
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 5.8e-112 408.3 339 62.8
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 7.1e-110 401.4 338 60.7
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 9.2e-110 401.0 331 62.2
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.6e-109 400.2 336 61.3
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 7.8e-109 397.9 340 61.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 1.0e-108 397.5 329 62.3
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 1.7e-108 396.7 333 61.3
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.3e-108 396.4 344 59.9
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 6.6e-108 394.8 338 60.4
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.2e-106 390.6 333 58.0
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.2e-106 390.6 333 58.0
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 8.1e-106 387.9 334 60.2
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.7e-101 372.9 324 58.3
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 6.0e-101 371.7 336 57.4
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 6.0e-101 371.7 317 58.0
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 7.8e-101 371.3 262 68.3
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.9e-100 369.0 319 58.6
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 6.6e-100 368.2 284 63.0
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 8.4e-95 351.3 328 57.9
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.0e-88 330.1 252 66.3
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.0e-84 317.8 322 49.4
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.3e-82 310.8 329 52.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 6.9e-73 278.5 343 43.1
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 6.7e-68 261.9 350 40.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-63 247.3 184 66.3
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 2.9e-63 246.5 184 66.3
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 3.6e-61 239.6 251 54.2
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 4.3e-59 232.6 226 52.7
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 3.1e-57 226.5 186 62.4
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 5.0e-55 219.2 323 38.7
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.5e-51 207.6 149 67.8
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 5.9e-48 195.7 135 71.9
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 5.5e-46 189.1 161 60.9
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.4e-44 184.5 325 34.2
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.8e-42 176.8 142 63.4
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.9e-39 166.8 120 69.2
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 8.0e-37 158.7 100 75.0
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 4.0e-36 156.4 97 74.2
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 5.2e-36 156.0 100 75.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-35 154.5 123 65.0
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.5e-35 154.5 100 72.0
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.5e-35 154.5 100 71.0
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 2.8e-34 150.2 121 64.5
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.8e-34 150.2 97 73.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.1e-33 146.7 204 41.7
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 7.0e-33 145.6 124 57.3
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.6e-29 134.4 161 42.2
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-29 133.7 85 74.1
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-29 133.7 85 74.1
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 3.6e-29 133.3 285 31.6
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.5e-27 127.9 171 41.5
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.8e-25 120.9 185 40.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.1e-25 119.8 138 50.7
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.8e-23 113.2 184 39.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.3e-22 110.2 140 46.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.0e-20 103.6 135 47.4
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.2e-19 101.7 113 46.0
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.5e-14 84.0 98 44.9
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 5.6e-14 82.8 80 58.8
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-12 77.8 48 72.9
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-09 68.2 127 40.2
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.1e-09 66.6 58 55.2
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.9e-06 57.8 39 74.4
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 9.5e-06 55.5 40 60.0


User provided reference genes

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