Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 2.0e-283 978.4 491 100.0
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 4.0e-239 831.2 491 85.5
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.6e-232 809.3 490 83.3
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 3.6e-232 808.1 490 83.3
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 2.3e-226 788.9 490 82.0
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 3.2e-212 741.9 518 76.1
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 9.1e-183 644.0 485 67.8
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 1.3e-181 640.2 475 69.7
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 1.4e-180 636.7 495 66.3
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 7.2e-180 634.4 479 68.5
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 1.4e-178 630.2 477 67.9
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 2.2e-176 622.9 496 64.3
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 3.7e-176 622.1 502 64.7
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 8.5e-173 610.9 490 65.9
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 4.2e-172 608.6 467 65.3
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 2.3e-170 602.8 497 63.8
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 8.8e-170 600.9 546 60.4
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 3.3e-169 599.0 497 62.0
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 1.7e-168 596.7 498 62.0
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 3.5e-166 589.0 497 61.4
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.0e-165 587.4 494 61.1
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 1.0e-165 587.4 486 62.8
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 1.7e-165 586.6 497 60.8
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 3.2e-164 582.4 497 62.0
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 1.8e-162 576.6 498 60.4
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 3.0e-162 575.9 423 68.1
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 6.8e-162 574.7 423 68.1
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 2.8e-160 569.3 419 67.3
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 1.1e-159 567.4 423 66.2
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 1.4e-159 567.0 417 67.1
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 1.8e-159 566.6 423 65.7
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 1.8e-159 566.6 432 64.8
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 1.6e-158 563.5 424 67.0
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 1.6e-158 563.5 417 67.1
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 1.6e-158 563.5 494 61.5
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 1.6e-158 563.5 423 64.8
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 2.7e-158 562.8 435 66.2
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.7e-158 562.8 494 61.9
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 2.7e-158 562.8 423 65.0
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 7.7e-158 561.2 479 60.1
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 1.0e-157 560.8 494 60.7
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 1.7e-157 560.1 452 61.9
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 2.2e-157 559.7 483 59.0
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 3.8e-157 558.9 417 66.7
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 3.8e-157 558.9 423 64.1
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 5.0e-157 558.5 416 67.1
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 8.5e-157 557.8 491 59.5
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 1.1e-156 557.4 431 65.0
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.5e-156 557.0 423 63.6
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 1.6e-155 553.5 490 58.8
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 2.7e-155 552.7 415 63.6
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 3.6e-155 552.4 495 58.6
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 8.0e-155 551.2 423 63.4
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 5.2e-154 548.5 460 60.9
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 8.8e-154 547.7 419 64.4
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 1.2e-153 547.4 433 64.0
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 2.0e-153 546.6 413 64.4
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.3e-152 543.9 410 64.4
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 8.3e-152 541.2 419 65.9
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 1.1e-151 540.8 463 60.7
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 1.1e-151 540.8 442 62.7
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 1.8e-151 540.0 498 56.2
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.4e-151 539.7 492 59.3
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 2.4e-151 539.7 436 63.5
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 4.1e-151 538.9 430 60.9
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 9.1e-151 537.7 463 60.9
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 9.1e-151 537.7 469 59.3
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 2.0e-150 536.6 419 65.2
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 7.7e-150 534.6 406 63.3
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 1.7e-149 533.5 439 61.5
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 5.0e-149 531.9 482 58.3
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 2.5e-148 529.6 493 56.0
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 4.2e-148 528.9 476 57.6
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 8.9e-146 521.2 459 60.8
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.2e-145 520.8 422 58.3
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 2.0e-145 520.0 431 60.1
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 1.8e-143 513.5 371 67.7
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 7.0e-143 511.5 386 65.0
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 4.5e-142 508.8 419 57.8
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 4.5e-142 508.8 387 65.9
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 3.9e-141 505.8 471 56.5
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 5.0e-141 505.4 496 54.2
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 8.6e-141 504.6 465 57.4
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 6.1e-139 498.4 455 56.9
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 8.0e-139 498.0 442 60.2
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 2.2e-136 490.0 424 57.5
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 1.6e-134 483.8 374 63.9
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 4.3e-132 475.7 458 55.5
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 1.6e-131 473.8 425 56.7
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 2.0e-129 466.8 421 54.9
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 5.8e-129 465.3 367 59.9
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 1.7e-125 453.8 418 55.3
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 1.7e-125 453.8 362 59.1
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 8.6e-125 451.4 353 66.3
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.3e-116 422.9 427 51.8
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.1e-102 377.1 420 47.9
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 7.3e-100 368.6 280 65.7
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.6e-99 367.5 421 48.0
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 2.4e-98 363.6 417 45.1
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 1.5e-97 360.9 430 45.1
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 3.1e-90 336.7 398 45.2
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 3.4e-89 333.2 417 42.2
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 6.9e-82 308.9 299 51.8
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 5.8e-81 305.8 222 67.1
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 5.1e-77 292.7 256 60.5
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 2.5e-76 290.4 402 43.8
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 2.2e-72 277.3 308 52.9
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 2.9e-72 276.9 273 54.2
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 4.4e-52 209.9 223 51.1
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 2.2e-51 207.6 452 33.8
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 1.9e-47 194.5 436 32.1
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 5.7e-44 183.0 137 66.4
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 1.3e-35 155.2 98 72.4
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 8.6e-32 142.5 111 60.4
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 6.1e-30 136.3 103 66.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-29 135.6 407 28.0
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.8e-29 134.8 116 57.8
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 2.0e-28 131.3 141 53.2
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.3e-27 128.6 93 64.5
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.3e-24 118.6 79 72.2
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.9e-18 98.2 88 50.0
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 2.1e-14 84.7 70 60.0
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 5.2e-13 80.1 56 75.0
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 4.1e-10 70.5 69 52.2
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.2e-09 68.9 51 60.8
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 1.0e-08 65.9 71 54.9
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.5e-07 61.2 444 22.1
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.8e-06 57.8 427 22.2


User provided reference genes

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