Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 3.3e-201 704.9 377 100.0
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 3.0e-149 532.3 395 76.7
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 2.7e-142 509.2 395 74.4
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.5e-140 503.4 396 74.0
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.1e-132 477.2 399 72.2
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 5.3e-98 362.1 415 58.3
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 7.1e-95 351.7 289 71.3
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 9.3e-95 351.3 395 58.0
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 6.0e-94 348.6 401 57.6
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 8.7e-93 344.7 414 55.3
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 2.5e-92 343.2 410 55.9
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 2.5e-92 343.2 417 54.7
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 4.8e-91 339.0 418 54.8
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 6.3e-91 338.6 382 58.1
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 9.0e-90 334.7 413 55.0
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 7.2e-87 325.1 435 52.9
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.1e-84 317.8 417 52.3
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 1.9e-84 317.0 428 51.4
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 4.3e-84 315.8 417 53.0
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-82 311.2 417 52.8
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-82 311.2 419 53.5
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 1.4e-82 310.8 444 49.3
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 3.1e-82 309.7 416 52.6
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 5.3e-82 308.9 414 53.4
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 2.6e-81 306.6 383 54.0
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.5e-81 305.8 424 50.9
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 7.7e-81 305.1 295 63.4
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 2.2e-80 303.5 361 55.7
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 2.9e-80 303.1 289 61.2
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 8.5e-80 301.6 452 48.0
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 1.1e-79 301.2 381 53.8
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 2.5e-79 300.1 381 53.8
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 7.2e-79 298.5 431 48.0
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 2.7e-78 296.6 421 50.6
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 3.6e-78 296.2 435 49.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 4.6e-78 295.8 403 49.4
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.0e-77 294.7 433 49.4
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 3.0e-77 293.1 422 48.6
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 5.1e-77 292.4 433 49.2
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 6.7e-77 292.0 437 49.0
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 6.7e-77 292.0 439 49.0
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 2.0e-76 290.4 386 51.8
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 4.4e-76 289.3 400 50.5
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 2.8e-75 286.6 300 61.0
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 4.8e-75 285.8 399 49.6
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 8.2e-75 285.0 410 50.5
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 3.1e-74 283.1 416 48.6
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 2.0e-73 280.4 375 51.2
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 3.4e-73 279.6 508 42.5
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 4.5e-73 279.3 430 48.4
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 2.9e-72 276.6 377 49.1
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 7.2e-71 271.9 400 48.2
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 2.1e-70 270.4 415 47.2
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 2.3e-69 266.9 428 45.3
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 6.7e-69 265.4 419 47.7
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.1e-68 264.6 420 46.9
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 5.7e-68 262.3 419 46.8
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 9.7e-68 261.5 300 56.7
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 2.2e-67 260.4 407 47.7
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 6.3e-67 258.8 431 46.4
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 2.4e-66 256.9 399 47.6
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 4.1e-66 256.1 379 50.1
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 9.1e-66 255.0 401 49.9
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 4.5e-65 252.7 398 48.2
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 2.2e-64 250.4 437 44.2
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 5.0e-64 249.2 417 45.6
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.9e-63 247.3 356 47.8
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 9.4e-63 245.0 410 45.6
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 1.0e-61 241.5 334 52.1
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.4e-61 241.1 339 47.8
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 3.0e-61 240.0 414 44.9
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 5.2e-61 239.2 394 46.2
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.2e-61 239.2 338 51.2
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 5.2e-61 239.2 331 51.4
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 2.0e-60 237.3 376 47.9
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 3.3e-60 236.5 213 62.9
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 3.3e-60 236.5 414 43.2
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 2.2e-59 233.8 404 45.0
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 3.7e-59 233.0 419 43.2
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 2.0e-57 227.3 419 43.9
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.5e-57 226.5 288 49.3
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 4.5e-57 226.1 419 43.7
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 7.7e-57 225.3 465 41.1
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.8e-56 223.0 264 55.3
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 5.0e-56 222.6 342 44.7
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 6.5e-56 222.2 374 45.5
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.5e-55 221.1 223 61.0
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.5e-55 221.1 331 47.4
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 2.5e-55 220.3 289 49.5
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 9.4e-55 218.4 420 42.1
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 2.1e-54 217.2 326 46.6
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.1e-54 217.2 371 44.5
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.1e-54 217.2 238 52.9
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 3.6e-54 216.5 325 44.9
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 4.7e-54 216.1 298 52.0
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.4e-53 214.5 409 42.5
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 2.3e-53 213.8 457 40.0
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 3.0e-53 213.4 344 45.1
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 3.0e-53 213.4 430 40.9
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 5.2e-53 212.6 420 41.9
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.6e-52 210.3 377 43.0
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 1.3e-51 208.0 361 43.2
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 2.2e-51 207.2 388 41.0
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.8e-50 204.1 384 41.9
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 7.0e-50 202.2 505 37.4
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 8.5e-48 195.3 377 39.8
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 8.5e-48 195.3 307 45.3
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 4.7e-46 189.5 413 40.7
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.0e-45 188.3 397 40.8
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 3.3e-39 166.8 282 41.1
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 2.1e-38 164.1 159 59.7
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 4.4e-36 156.4 162 54.9
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 5.4e-34 149.4 227 45.8
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 6.6e-32 142.5 190 48.9
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 4.3e-31 139.8 271 39.5
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 4.3e-31 139.8 224 42.9
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.4e-29 134.8 223 40.8
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.8e-29 134.4 369 36.3
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.5e-28 131.3 224 40.6
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.0e-25 120.9 97 68.0
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.0e-24 118.6 285 37.2
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 6.6e-24 115.9 110 52.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.2e-22 111.7 266 34.6
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.6e-22 111.3 128 44.5
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.4e-20 103.2 77 67.5
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.3e-13 80.9 49 75.5
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 3.8e-11 73.6 119 36.1


User provided reference genes

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