Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 1.8e-240 835.5 408 100.0
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 3.5e-220 768.1 403 92.8
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.6e-199 698.7 410 83.4
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.7e-182 642.9 401 79.3
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.4e-181 639.8 401 78.8
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.5e-180 635.2 401 78.6
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 8.1e-177 624.0 403 76.2
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 9.9e-175 617.1 403 75.7
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 9.2e-165 583.9 396 71.5
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 8.7e-163 577.4 408 70.8
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.3e-162 575.5 401 71.6
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 8.1e-161 570.9 399 70.9
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.4e-157 558.1 405 67.9
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 6.0e-156 554.7 405 67.4
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-154 550.4 402 67.4
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.3e-153 547.0 408 65.7
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.1e-152 543.9 405 65.4
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 6.9e-152 541.2 405 65.2
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 2.9e-150 535.8 392 66.8
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 2.9e-150 535.8 405 65.2
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 6.4e-150 534.6 399 66.2
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.2e-149 531.9 405 64.2
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.4e-149 531.6 405 63.7
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.1e-148 529.6 406 64.0
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 6.0e-148 528.1 405 63.5
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 8.7e-147 524.2 405 64.0
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.8e-145 519.2 395 63.3
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.1e-144 515.8 406 62.6
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.5e-143 513.5 398 62.8
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.0e-143 513.1 401 64.3
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.6e-143 512.7 398 63.8
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.9e-142 509.2 394 63.7
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.8e-142 508.8 349 73.6
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.4e-141 506.9 405 63.0
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.5e-140 502.3 406 60.1
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.6e-140 501.9 377 64.5
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.7e-139 498.0 386 62.7
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.5e-138 496.9 406 61.1
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.5e-138 496.1 293 81.2
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.9e-136 488.0 394 60.7
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.2e-135 487.3 392 62.2
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 4.5e-135 485.3 397 61.0
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.9e-134 482.6 396 59.6
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.9e-134 482.6 396 59.6
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 8.4e-134 481.1 396 60.6
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.9e-133 479.9 392 61.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-133 479.9 392 62.0
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.5e-133 479.6 389 59.4
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.2e-133 478.8 392 61.7
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.6e-132 476.9 392 62.5
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 6.0e-132 474.9 394 60.7
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.8e-131 473.4 388 58.8
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.9e-131 472.2 402 60.0
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 6.7e-131 471.5 396 58.3
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 8.7e-131 471.1 396 58.1
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.9e-130 469.9 396 59.3
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.6e-129 466.8 371 60.4
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.8e-129 466.1 363 62.8
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.8e-129 465.3 372 59.9
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.1e-128 464.2 404 57.7
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 1.8e-128 463.4 404 57.9
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 2.4e-128 463.0 396 56.1
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-127 460.3 394 57.4
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.5e-127 458.8 407 56.5
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.2e-126 456.4 406 56.2
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 2.2e-126 456.4 403 56.3
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 3.8e-126 455.7 406 55.2
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 6.5e-126 454.9 404 57.2
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.1e-125 454.1 402 56.2
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.9e-125 453.4 403 56.3
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.5e-125 453.0 400 57.0
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.2e-125 452.6 385 58.4
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 4.2e-125 452.2 361 60.4
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 9.4e-125 451.1 396 56.3
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 1.2e-124 450.7 398 57.0
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.1e-124 449.9 395 56.5
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.9e-123 445.7 371 60.6
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 6.7e-123 444.9 403 57.6
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 4.3e-122 442.2 385 56.6
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 9.7e-122 441.0 387 56.1
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 4.8e-121 438.7 387 55.8
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-120 437.2 397 56.9
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 3.1e-120 436.0 399 55.6
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 3.1e-120 436.0 398 55.5
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 5.3e-120 435.3 303 71.6
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 6.9e-120 434.9 397 54.4
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.2e-119 434.1 366 59.6
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.5e-119 433.7 395 54.9
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.6e-119 433.0 399 55.4
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 4.5e-119 432.2 397 54.2
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 1.0e-118 431.0 390 57.4
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.0e-118 431.0 390 57.4
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 1.3e-118 430.6 392 55.6
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 8.5e-118 427.9 402 55.0
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 8.5e-118 427.9 391 55.2
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.1e-117 427.6 404 55.4
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-117 427.2 390 56.2
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.4e-117 427.2 354 59.6
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.9e-117 426.8 403 55.1
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.9e-117 426.8 397 55.9
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.6e-114 416.4 389 53.2
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 4.4e-114 415.6 402 52.0
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.4e-114 414.8 389 53.0
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.3e-113 414.1 399 51.4
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.2e-113 413.3 353 59.2
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.8e-113 412.9 312 64.4
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 8.2e-113 411.4 396 50.3
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 2.9e-110 402.9 333 59.8
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 3.8e-110 402.5 377 52.3
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.5e-109 398.7 386 54.4
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.8e-107 393.7 366 52.2
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 2.3e-107 393.3 407 50.4
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.3e-106 389.4 394 50.8
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 5.7e-106 388.7 403 52.4
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.3e-105 387.5 397 50.6
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.7e-105 387.1 388 48.2
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.3e-105 385.2 393 50.4
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-104 384.0 403 49.9
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 1.4e-104 384.0 386 50.3
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.1e-104 382.9 392 53.3
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 5.3e-104 382.1 393 50.9
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 7.0e-104 381.7 393 50.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 7.0e-104 381.7 393 50.9
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.0e-103 380.2 402 48.8
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 3.5e-103 379.4 353 51.8
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.3e-102 377.5 395 49.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.3e-102 377.5 393 50.1
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 5.5e-101 372.1 395 50.1
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 6.1e-100 368.6 405 50.4
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.3e-99 366.7 399 49.9
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 7.7e-95 351.7 366 46.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.1e-92 343.6 386 47.2
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 3.0e-91 339.7 399 45.6
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 8.8e-91 338.2 390 43.6
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 9.8e-90 334.7 370 49.7
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.1e-88 329.3 406 42.4
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.6e-87 327.4 391 45.5
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.2e-84 317.8 368 47.3
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.4e-83 314.3 409 42.3
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.4e-83 314.3 377 45.1
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.0e-83 313.2 298 57.4
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.2e-80 301.6 415 41.0
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.0e-79 300.4 366 42.6
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.9e-78 296.2 424 38.7
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.5e-74 284.3 386 43.0
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.6e-74 283.5 279 53.0
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 3.5e-71 273.1 366 42.1
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 6.0e-71 272.3 299 47.8
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.3e-69 266.2 372 39.5
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 9.5e-69 265.0 356 43.5
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.1e-67 261.5 368 40.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-66 258.1 232 56.5
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 7.1e-56 222.2 270 42.2
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.5e-50 204.5 174 57.5
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.4e-50 203.4 239 47.7
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 5.4e-48 196.1 181 53.6
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.8e-44 183.7 202 47.0
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.6e-44 183.3 174 54.6
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-43 181.4 191 51.8
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.2e-42 178.3 175 52.6
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 2.9e-41 173.7 139 59.0
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.4e-40 171.4 353 34.8
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 8.1e-36 155.6 349 32.7
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 1.1e-35 155.2 129 60.5
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 9.9e-34 148.7 132 54.5
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.4e-33 145.6 307 32.6
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 5.1e-30 136.3 151 49.0
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 6.9e-27 125.9 114 51.8
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.5e-24 117.5 86 64.0
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 5.8e-18 96.3 378 26.5
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 8.4e-17 92.4 353 25.2
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.5e-15 87.0 65 63.1
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.6e-15 86.7 259 28.2
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.9e-13 81.3 61 60.7


User provided reference genes

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