Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 2.0e-92 342.4 173 100.0
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 3.4e-84 315.1 175 92.6
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 6.6e-80 300.8 173 89.0
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 2.1e-78 295.8 176 86.9
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 1.1e-77 293.5 176 85.2
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 3.8e-75 285.0 176 84.7
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 3.8e-75 285.0 176 84.7
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 4.9e-75 284.6 176 84.1
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 9.3e-74 280.4 179 81.6
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 6.6e-72 274.2 179 81.0
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 1.1e-71 273.5 177 80.8
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 2.5e-71 272.3 179 80.4
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 4.3e-71 271.6 179 80.4
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 5.6e-71 271.2 179 80.4
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 1.6e-70 269.6 179 79.9
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.4e-69 266.5 175 78.3
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.8e-69 266.2 175 78.3
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.4e-69 265.8 150 89.3
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.0e-69 265.0 168 79.8
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 6.9e-69 264.2 179 76.5
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 6.9e-69 264.2 177 75.7
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 6.9e-69 264.2 179 78.8
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 9.0e-69 263.8 178 77.5
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 1.5e-68 263.1 176 75.0
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 9.9e-68 260.4 182 76.4
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.9e-67 258.8 180 73.3
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 1.9e-66 256.1 166 79.5
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 4.2e-66 255.0 152 85.5
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.4e-66 254.6 179 74.9
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.6e-65 253.1 178 75.3
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.1e-65 252.7 178 75.3
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.7e-65 252.3 178 74.7
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 4.6e-65 251.5 176 76.1
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 7.9e-65 250.8 176 76.1
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 7.9e-65 250.8 164 79.3
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.3e-64 250.0 178 72.5
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.3e-64 250.0 176 75.6
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.3e-64 250.0 176 75.6
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 3.0e-64 248.8 179 74.9
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.0e-64 248.8 176 75.0
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 3.9e-64 248.4 180 75.0
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.9e-64 248.4 175 76.6
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.9e-64 248.4 175 76.6
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 6.7e-64 247.7 174 75.9
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 6.7e-64 247.7 176 73.3
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 8.7e-64 247.3 179 73.2
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 1.1e-63 246.9 179 72.6
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 1.9e-63 246.1 178 73.6
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 5.6e-63 244.6 179 72.1
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.3e-62 243.4 178 72.5
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 4.8e-62 241.5 182 73.1
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 5.3e-61 238.0 178 70.2
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 6.9e-61 237.7 169 75.1
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 1.5e-60 236.5 178 70.8
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 1.5e-60 236.5 178 70.8
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 2.0e-60 236.1 147 80.3
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 2.6e-60 235.7 168 72.0
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 2.6e-60 235.7 177 71.8
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 3.4e-60 235.3 168 73.8
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 5.8e-60 234.6 169 74.0
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 5.8e-60 234.6 177 71.2
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.0e-59 233.8 178 70.2
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 1.7e-59 233.0 177 70.6
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 3.8e-59 231.9 181 68.5
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 3.8e-59 231.9 176 72.2
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.9e-58 229.6 174 71.3
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 1.9e-58 229.6 176 71.0
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 1.9e-58 229.6 208 64.4
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 5.5e-58 228.0 176 70.5
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 7.1e-58 227.6 181 67.4
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 2.1e-57 226.1 176 68.8
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 2.1e-57 226.1 180 69.4
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 2.1e-57 226.1 169 66.9
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 1.8e-56 223.0 176 66.5
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 2.3e-56 222.6 181 67.4
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 5.1e-56 221.5 137 79.6
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 6.7e-56 221.1 167 68.9
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 1.5e-55 219.9 176 64.8
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 1.5e-55 219.9 137 79.6
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 1.5e-55 219.9 180 66.1
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 2.5e-55 219.2 171 64.9
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 3.3e-55 218.8 176 64.8
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 3.3e-55 218.8 179 68.7
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 4.3e-55 218.4 177 64.4
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 2.1e-54 216.1 182 67.6
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 3.7e-54 215.3 236 55.5
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 3.7e-54 215.3 135 80.7
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 6.2e-54 214.5 174 66.1
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 5.3e-53 211.5 177 66.1
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 1.2e-52 210.3 159 71.1
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 1.5e-52 209.9 138 77.5
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.0e-51 207.2 165 67.3
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.3e-51 206.8 133 76.7
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.9e-51 205.7 183 63.9
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 7.1e-50 201.1 176 62.5
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 4.6e-49 198.4 137 73.7
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 1.3e-48 196.8 129 77.5
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 2.3e-48 196.1 164 67.1
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 3.9e-48 195.3 175 64.0
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 5.1e-48 194.9 148 69.6
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 2.5e-47 192.6 163 63.8
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 2.5e-47 192.6 162 63.0
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 2.5e-47 192.6 162 63.0
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 2.5e-47 192.6 162 63.0
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 4.3e-47 191.8 162 63.0
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 5.7e-47 191.4 178 59.0
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.8e-46 189.1 175 62.9
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 9.0e-45 184.1 125 72.8
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.6e-44 182.6 112 79.5
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 7.7e-44 181.0 107 81.3
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 1.3e-43 180.3 163 61.3
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.9e-42 176.4 175 60.6
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.6e-41 173.3 143 67.1
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 1.1e-39 167.2 156 58.3
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 3.1e-37 159.1 172 51.7
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 8.5e-35 151.0 181 47.0
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 8.5e-35 151.0 178 48.3
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 3.7e-30 135.6 141 53.2
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 1.2e-28 130.6 97 66.0
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.5e-28 129.0 119 59.7
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 1.6e-25 120.2 139 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.4e-24 117.1 104 54.8
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 1.4e-24 117.1 99 57.6
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 2.3e-24 116.3 160 46.2
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 3.0e-24 115.9 80 71.2
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.4e-21 107.1 72 80.6
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 5.0e-19 98.6 85 60.0
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-17 92.8 135 41.5
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 8.8e-16 87.8 83 60.2
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.6e-12 77.0 71 63.4
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 8.5e-11 71.2 54 55.6
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 1.2e-07 60.8 38 76.3
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.2e-07 60.8 116 38.8
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 5.7e-07 58.5 43 72.1
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 1.3e-06 57.4 118 36.4


User provided reference genes

Program Settings