Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 3172.5 1845 100.0
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 2311.6 1859 74.9
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 2306.2 1858 74.5
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 2304.2 1737 77.2
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1328.5 1905 49.2
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1320.4 1889 48.3
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1313.1 1782 48.4
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1277.3 1826 50.9
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1270.4 1742 50.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1251.9 1745 48.0
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1245.0 1769 47.4
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1245.0 1769 47.4
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1224.9 1763 47.2
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1189.9 1939 44.8
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1183.7 1774 46.8
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1177.9 997 71.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1155.6 1879 46.7
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1131.3 1781 44.2
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 1110.1 1758 46.5
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1093.2 1783 44.2
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 4.0e-308 1062.4 1683 44.7
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.7e-306 1057.0 1787 44.2
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.7e-303 1047.0 1885 40.7
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 9.6e-302 1041.2 1771 42.5
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 1.1e-297 1027.7 1860 41.7
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 9.3e-297 1024.6 1884 43.6
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-285 987.3 1761 40.8
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 9.0e-284 981.5 1887 39.1
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 6.4e-282 975.3 1865 40.3
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.5e-278 963.4 1855 38.3
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 2.2e-274 950.3 1821 39.5
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.2e-272 944.5 1773 40.7
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 4.3e-270 936.0 1752 40.3
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 7.4e-270 935.3 1785 40.7
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 3.7e-269 932.9 1232 48.1
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 3.1e-268 929.9 1889 41.1
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 5.3e-268 929.1 1820 38.7
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.5e-267 927.5 1771 39.8
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 3.6e-264 916.4 1825 38.9
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 4.6e-264 916.0 1878 41.6
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 2.5e-262 910.2 981 59.0
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 9.1e-260 901.7 1810 37.7
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 9.1e-260 901.7 2151 36.0
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 3.4e-259 899.8 1782 39.3
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.9e-257 894.0 1893 39.5
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 4.2e-257 892.9 1812 37.7
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 7.2e-257 892.1 1812 37.5
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 3.9e-255 886.3 1766 39.5
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 4.4e-254 882.9 1787 37.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.4e-254 882.1 1911 37.4
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.4e-254 882.1 1826 38.3
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.8e-252 877.5 1969 40.4
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 3.1e-252 876.7 1787 39.1
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 5.3e-252 875.9 1783 38.8
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 6.1e-248 862.4 1737 39.3
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 2.4e-244 850.5 1776 37.3
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 5.5e-241 839.3 1958 36.9
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 4.0e-239 833.2 1776 38.9
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 3.7e-237 826.6 1791 37.2
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 4.8e-237 826.2 1811 36.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 8.3e-237 825.5 1710 38.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 5.3e-236 822.8 1913 38.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.2e-233 813.1 1628 39.5
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 4.4e-230 803.1 1806 36.4
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 3.7e-229 800.0 1869 38.8
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 7.0e-228 795.8 1810 36.5
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.5e-225 787.3 1777 36.6
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 1.2e-222 778.5 1747 36.5
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 4.1e-220 770.0 1872 37.9
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.9e-218 763.8 1180 43.0
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.9e-217 761.1 1832 37.3
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.5e-214 751.5 1760 37.6
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.7e-211 740.7 1797 34.5
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.5e-206 724.9 1752 35.1
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.5e-206 724.9 1770 35.6
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.1e-204 718.8 1936 36.1
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 7.3e-201 706.1 801 54.9
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 3.8e-189 667.2 1540 36.8
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 6.6e-186 656.4 1778 34.9
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.6e-184 651.7 1811 32.1
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.3e-181 642.1 971 42.0
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.5e-174 618.6 1892 35.5
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.5e-166 592.0 1739 31.3
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.9e-164 585.1 1492 35.1
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.9e-164 585.1 1492 35.1
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.3e-162 578.9 877 44.6
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 4.8e-160 570.5 1525 33.4
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 2.1e-147 528.5 1753 30.6
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-145 521.9 793 43.1
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 4.1e-135 487.6 1849 28.8
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.2e-126 459.5 847 37.9
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.8e-117 427.9 904 38.3
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 7.5e-113 413.7 925 36.0
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 3.3e-100 371.7 443 45.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.0e-98 366.7 1085 40.4
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.7e-88 332.8 966 34.4
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 2.4e-87 328.9 895 35.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 7.8e-86 323.9 1056 27.8
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.3e-82 312.4 692 35.3
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 8.4e-80 303.9 652 36.2
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 1.1e-76 293.5 1118 26.9
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 8.4e-72 277.3 472 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 4.2e-71 275.0 1125 28.3
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.7e-69 269.6 485 40.6
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 1.3e-67 263.5 689 37.6
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 3.1e-66 258.8 1009 28.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.6e-65 255.8 607 45.1
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.0e-61 243.8 417 42.0
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 4.0e-58 231.9 854 31.4
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.6e-57 229.2 1777 23.3
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.4e-55 222.6 230 56.5
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.3e-53 216.9 686 34.1
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 5.6e-52 211.5 240 49.2
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.8e-50 206.5 167 66.5
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.0e-50 205.3 239 46.0
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.1e-47 197.2 238 47.1
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.1e-46 193.0 151 62.3
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 6.7e-45 188.0 275 47.6
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 9.6e-44 184.1 191 50.8
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.1e-43 183.0 195 51.8
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.6e-41 176.0 205 48.8
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.3e-35 154.8 729 30.2
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 8.2e-35 154.5 1002 29.0
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 7.2e-31 141.4 434 35.5
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.7e-29 134.8 91 70.3
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.1e-28 134.0 408 31.1
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 4.8e-27 128.6 134 56.0
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.8e-26 126.7 191 40.3
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 9.1e-26 124.4 140 44.3
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 3.6e-22 112.5 133 48.1
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.1e-22 111.7 222 39.2
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.0e-21 110.9 909 25.6
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 2.2e-19 103.2 80 60.0
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 5.3e-18 98.6 373 30.6
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.2e-16 93.2 730 22.6
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 2.9e-16 92.8 302 33.4
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-14 87.4 88 50.0
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.2e-14 87.4 130 42.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.6e-14 87.0 68 57.4
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 2.1e-14 86.7 113 52.2
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.8e-13 83.6 88 48.9
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.5e-12 78.2 83 47.0
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 6.3e-11 75.1 99 43.4
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.8e-10 73.6 336 25.0
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 1.8e-10 73.6 92 45.7
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.1e-10 72.8 67 52.2
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 5.3e-10 72.0 258 31.8
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.7e-09 68.2 47 72.3
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 1.1e-07 64.3 141 36.9
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 4.2e-07 62.4 69 46.4
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 7.2e-07 61.6 128 32.0
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.2e-06 60.8 61 45.9


User provided reference genes

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