Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 4.5e-58 227.6 109 100.0
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.7e-41 172.6 108 75.0
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.0e-33 146.7 79 89.9
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.3e-33 146.4 79 89.9
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.7e-33 146.0 79 88.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.9e-33 145.2 79 88.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.5e-33 144.1 79 87.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.5e-33 144.1 79 87.3
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.5e-33 144.1 79 87.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 6.5e-33 144.1 79 87.3
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.9e-32 142.5 157 48.4
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.5e-32 142.1 79 87.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.2e-32 141.7 79 82.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 4.2e-32 141.4 79 81.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 5.5e-32 141.0 79 84.8
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 9.4e-32 140.2 79 83.5
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.6e-31 139.4 79 83.5
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.6e-31 139.4 79 81.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.6e-31 139.4 79 82.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.1e-31 139.0 79 82.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.7e-31 138.7 79 83.5
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.6e-31 138.3 79 79.7
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.6e-31 138.3 79 78.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.6e-31 138.3 79 78.5
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.7e-31 137.9 79 79.7
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.7e-31 137.9 79 78.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 6.1e-31 137.5 79 78.5
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 6.1e-31 137.5 79 78.5
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 8.0e-31 137.1 79 79.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 8.0e-31 137.1 79 79.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 8.0e-31 137.1 79 79.7
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 8.0e-31 137.1 79 79.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 8.0e-31 137.1 79 78.5
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 8.0e-31 137.1 79 78.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.0e-30 136.7 79 78.5
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.0e-30 136.7 79 77.2
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.4e-30 136.3 79 79.7
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.8e-30 136.0 79 81.0
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.8e-30 136.0 79 79.7
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.8e-30 136.0 79 77.2
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.8e-30 136.0 79 81.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.3e-30 135.6 79 78.5
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.3e-30 135.6 79 78.5
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.3e-30 135.6 79 81.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 3.0e-30 135.2 79 78.5
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 3.0e-30 135.2 79 78.5
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.0e-30 135.2 79 79.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 79.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 78.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 78.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 78.5
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 78.5
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 79.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 79.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.0e-30 134.8 79 81.0
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.2e-30 134.4 79 79.7
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.8e-30 134.0 79 78.5
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 6.8e-30 134.0 79 77.2
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.8e-30 134.0 79 78.5
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 6.8e-30 134.0 79 78.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 8.8e-30 133.7 79 79.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 8.8e-30 133.7 79 77.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 8.8e-30 133.7 79 77.2
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 8.8e-30 133.7 79 79.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.2e-29 133.3 79 75.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.5e-29 132.9 79 77.2
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.0e-29 132.5 79 77.2
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.0e-29 132.5 79 78.5
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.6e-29 132.1 79 79.7
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 2.6e-29 132.1 79 77.2
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.6e-29 132.1 79 75.9
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 2.6e-29 132.1 79 75.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.6e-29 132.1 79 78.5
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.6e-29 132.1 79 77.2
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.4e-29 131.7 79 77.2
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 3.4e-29 131.7 79 77.2
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 3.4e-29 131.7 79 78.5
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.4e-29 131.3 79 78.5
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 4.4e-29 131.3 79 78.5
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 4.4e-29 131.3 79 78.5
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.7e-29 131.0 79 77.2
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.7e-29 131.0 79 77.2
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 5.7e-29 131.0 79 78.5
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 5.7e-29 131.0 79 78.5
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 75.9
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 77.2
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 78.5
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 78.5
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 77.2
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 77.2
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 7.5e-29 130.6 79 77.2
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 9.8e-29 130.2 79 75.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 9.8e-29 130.2 79 77.2
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.3e-28 129.8 79 75.9
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.3e-28 129.8 79 74.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.2e-28 129.0 79 75.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.2e-28 129.0 79 77.2
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.2e-28 129.0 79 75.9
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.2e-28 129.0 79 73.4
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.2e-28 129.0 85 71.8
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.2e-28 129.0 79 74.7
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.8e-28 128.6 79 75.9
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.8e-28 128.6 79 75.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 3.7e-28 128.3 79 75.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.7e-28 128.3 79 75.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.7e-28 128.3 79 74.7
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.7e-28 128.3 79 75.9
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 3.7e-28 128.3 79 75.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 4.8e-28 127.9 79 74.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.8e-28 127.9 79 75.9
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.8e-28 127.9 79 74.7
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 8.3e-28 127.1 79 74.7
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-27 126.7 79 74.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.1e-27 126.7 79 73.4
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.1e-27 126.7 79 75.9
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.4e-27 126.3 79 75.9
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.4e-27 126.3 79 75.9
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.4e-27 126.3 82 73.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-27 125.9 82 72.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 2.4e-27 125.6 79 72.2
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 5.4e-27 124.4 77 83.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.0e-27 124.0 79 74.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.6e-26 122.9 79 69.6
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.0e-26 122.5 79 69.6
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-26 121.7 79 74.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.3e-25 119.8 79 69.6
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.3e-25 119.8 79 69.6
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.6e-25 117.1 79 73.4
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.9e-24 115.9 79 68.4
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.5e-24 115.5 79 69.6
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 3.6e-23 111.7 82 64.6
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.1e-23 110.9 78 65.4
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 8.0e-23 110.5 79 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.0e-22 108.2 79 64.6
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.1e-19 100.1 66 72.7
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 9.2e-19 97.1 56 80.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.3e-17 92.4 87 52.9
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 6.8e-14 80.9 79 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.2e-13 80.1 49 71.4
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.4e-13 78.6 81 46.9
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.8e-13 77.8 79 53.2
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-11 72.8 46 73.9
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.7e-10 68.9 51 66.7
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.5e-10 68.6 39 74.4


User provided reference genes

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