Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.2e-134 482.3 238 100.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.7e-131 470.3 238 96.6
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 4.2e-109 398.3 228 83.8
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.2e-108 396.7 228 83.8
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.7e-108 395.6 228 83.3
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.5e-98 363.2 244 73.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.6e-92 343.2 240 71.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.6e-92 343.2 240 70.8
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.3e-89 331.3 232 69.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.0e-88 327.8 240 67.5
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 9.1e-88 327.4 239 66.9
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.6e-87 326.6 240 66.7
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.9e-87 324.7 240 66.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.0e-86 323.9 240 65.8
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.8e-86 322.0 230 69.6
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.9e-85 319.7 232 65.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 9.4e-85 317.4 240 65.8
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.7e-84 315.1 241 64.7
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.0e-83 312.4 241 63.5
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-82 309.7 243 65.4
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.3e-81 307.0 234 64.1
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.7e-81 306.6 232 63.4
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.8e-81 305.8 234 64.1
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.8e-81 305.8 240 62.9
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.0e-78 297.4 234 63.7
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.7e-78 296.6 242 60.7
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.0e-78 295.0 240 59.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 8.5e-78 294.3 240 58.8
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.9e-77 293.1 236 61.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 5.5e-77 291.6 237 59.9
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 5.5e-77 291.6 240 58.3
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.0e-75 285.8 240 59.2
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.2e-75 285.0 240 59.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-74 283.1 244 57.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-74 283.1 244 57.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.4e-74 282.0 238 57.6
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.4e-74 282.0 238 57.6
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.7e-74 281.6 238 57.6
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 7.5e-74 281.2 238 59.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 7.5e-74 281.2 238 57.6
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.3e-73 280.4 238 59.2
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-73 280.4 244 57.0
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.8e-73 278.5 238 57.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 6.3e-73 278.1 200 66.5
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.8e-72 276.6 244 56.1
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.4e-72 276.2 240 56.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.4e-72 276.2 230 57.0
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 7.0e-72 274.6 232 59.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.5e-71 271.9 238 56.3
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.7e-71 271.2 238 53.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.9e-70 269.2 237 56.1
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.0e-70 268.5 225 58.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.6e-68 263.5 235 55.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.1e-68 263.1 237 54.9
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.8e-68 262.7 211 64.0
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.6e-68 262.3 240 54.6
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 8.0e-68 261.2 238 54.6
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 6.8e-67 258.1 238 53.8
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 7.5e-66 254.6 238 53.4
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 9.8e-66 254.2 236 55.1
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 9.8e-66 254.2 215 57.2
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.2e-65 253.1 238 54.2
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.8e-65 252.7 238 55.0
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 4.9e-65 251.9 229 54.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.1e-64 248.8 231 52.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 5.4e-64 248.4 234 55.6
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 9.2e-64 247.7 238 51.3
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.6e-63 246.9 225 52.9
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.0e-63 246.5 240 52.1
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 3.5e-63 245.7 240 50.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 5.9e-63 245.0 236 51.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.0e-62 244.2 231 52.4
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.8e-62 242.3 239 50.2
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.6e-62 241.5 239 50.2
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.6e-62 241.1 236 50.8
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.5e-61 240.4 240 51.2
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.6e-61 238.4 236 50.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 9.5e-61 237.7 241 51.9
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.6e-60 235.7 235 50.2
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 8.0e-60 234.6 232 51.3
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.0e-59 234.2 238 50.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-59 233.8 201 56.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.3e-59 233.0 231 50.6
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.3e-59 233.0 242 50.0
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 8.9e-59 231.1 233 50.6
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.5e-58 230.3 229 49.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 3.4e-58 229.2 230 51.7
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.5e-58 228.0 241 47.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 9.8e-58 227.6 231 48.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 9.8e-58 227.6 241 49.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.7e-57 226.9 225 50.7
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.2e-57 226.5 231 49.8
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 2.2e-57 226.5 234 50.0
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 2.2e-57 226.5 238 47.9
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.9e-57 225.3 230 48.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.4e-56 223.8 197 56.3
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.9e-56 223.4 240 46.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 4.1e-56 222.2 231 50.6
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.1e-56 222.2 230 47.0
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.1e-56 222.2 230 47.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 5.4e-56 221.9 231 48.5
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 7.0e-56 221.5 235 48.1
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.0e-56 221.5 198 53.0
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.2e-55 220.7 232 48.3
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-55 220.7 232 46.6
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.7e-55 219.5 230 46.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 3.5e-55 219.2 230 46.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 3.5e-55 219.2 230 46.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.0e-55 218.4 235 49.4
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 3.0e-54 216.1 230 45.2
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 5.0e-54 215.3 233 48.1
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.1e-53 214.2 154 61.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.5e-53 213.8 234 46.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.5e-53 213.0 233 46.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.5e-53 213.0 217 50.7
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.3e-53 212.2 154 60.4
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.7e-52 208.8 226 47.8
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.1e-51 207.6 233 45.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.0e-51 205.7 226 47.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.5e-50 203.8 223 46.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.5e-50 203.8 241 42.7
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.4e-50 202.6 225 46.2
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.4e-50 202.6 230 47.4
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.5e-50 201.4 194 49.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 9.8e-50 201.1 239 45.2
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 9.8e-50 201.1 237 44.3
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-49 200.7 226 47.3
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.7e-49 199.1 208 50.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.4e-48 195.3 211 48.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 9.2e-48 194.5 234 43.6
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.1e-47 193.4 221 46.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.7e-47 193.0 211 48.8
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.6e-46 188.0 213 48.8
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 8.6e-46 188.0 232 41.4
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.8e-44 183.0 217 44.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.8e-44 183.0 166 51.8
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-43 180.6 226 44.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.1e-43 179.5 231 43.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.1e-43 179.5 231 43.3
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.1e-43 179.5 152 56.6
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 8.9e-43 177.9 240 42.5
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.4e-42 176.0 155 54.2
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 7.5e-42 174.9 178 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 9.9e-42 174.5 218 40.4
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 9.9e-42 174.5 147 57.8
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.7e-41 173.7 214 38.8
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.9e-41 172.9 214 38.3
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.7e-41 172.6 181 47.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-40 171.0 211 46.4
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 9.2e-40 167.9 169 52.7
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.7e-39 166.4 237 35.4
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 8.6e-38 161.4 227 39.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 2.5e-37 159.8 225 37.8
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 5.6e-37 158.7 117 65.8
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.5e-37 157.9 203 44.8
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-36 157.5 144 52.8
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 2.6e-34 149.8 223 37.2
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 9.9e-34 147.9 192 38.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 6.0e-31 138.7 112 61.6
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.0e-30 136.3 201 43.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 9.6e-29 131.3 139 46.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.1e-28 128.3 135 51.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-27 127.9 145 47.6
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 7.1e-24 115.2 88 58.0
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.2e-23 114.4 83 67.5
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 7.8e-23 111.7 180 39.4
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.7e-22 110.5 124 45.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-21 107.5 92 53.3
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.5e-18 97.4 92 46.7
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 4.5e-18 95.9 78 51.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.7e-17 94.0 80 55.0
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.8e-17 92.8 217 32.7
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 7.1e-16 88.6 165 32.7
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.7e-15 86.7 113 38.9
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.0e-14 84.7 97 41.2
Thecc.03G134500 Theobroma cacao HOM05D003762 ORTHO05D004374 3.3e-13 79.7 171 36.8
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 9.6e-13 78.2 66 51.5
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 3.7e-12 76.3 99 40.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 3.4e-10 69.7 113 38.9
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.8e-09 66.2 78 35.9
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.7e-07 60.1 76 44.7
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.9e-07 58.5 66 51.5


User provided reference genes

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