Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 3.7e-152 541.6 284 100.0
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.4e-134 481.9 321 82.6
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.6e-131 473.0 352 75.9
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.4e-130 469.9 352 76.1
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.1e-130 468.0 319 81.8
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 4.2e-124 448.4 242 97.5
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 5.2e-122 441.4 354 70.3
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.5e-121 437.6 352 70.2
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 4.8e-120 434.9 356 69.1
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 4.8e-120 434.9 242 93.0
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.1e-119 433.7 353 69.7
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 1.1e-119 433.7 242 92.6
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.8e-119 433.0 242 93.0
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 2.4e-119 432.6 242 93.4
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 2.4e-119 432.6 242 93.4
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 4.1e-119 431.8 242 92.6
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 7.0e-119 431.0 241 92.5
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 1.2e-118 430.3 242 92.6
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 2.0e-118 429.5 242 93.0
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 3.5e-118 428.7 242 91.7
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.5e-118 428.7 352 67.6
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 4.5e-118 428.3 242 92.1
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 7.7e-118 427.6 242 92.1
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 7.7e-118 427.6 246 90.7
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 7.7e-118 427.6 242 91.3
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 1.3e-117 426.8 242 91.3
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.7e-117 426.4 242 91.7
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 2.2e-117 426.0 242 91.7
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 5.0e-117 424.9 242 90.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 5.0e-117 424.9 246 89.0
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 8.5e-117 424.1 242 90.9
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 8.5e-117 424.1 242 90.9
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.1e-116 423.7 242 91.3
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.1e-116 423.7 242 91.3
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 1.1e-116 423.7 242 91.3
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.9e-116 422.9 268 84.3
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.9e-116 422.9 242 91.7
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 2.5e-116 422.5 242 91.7
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 3.2e-116 422.2 242 91.7
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 4.2e-116 421.8 242 92.1
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 7.2e-116 421.0 242 91.3
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 1.2e-115 420.2 242 90.9
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.2e-115 420.2 242 88.8
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 1.2e-115 420.2 242 91.3
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.7e-115 419.1 241 91.3
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 2.7e-115 419.1 268 83.2
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 6.1e-115 417.9 242 89.3
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 2.3e-114 416.0 246 87.8
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.3e-114 416.0 242 90.1
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 8.8e-114 414.1 239 91.2
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 1.5e-113 413.3 242 89.7
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 2.6e-113 412.5 242 88.8
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 3.4e-113 412.1 242 89.7
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.4e-113 412.1 242 88.4
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.5e-113 411.0 242 88.0
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.5e-113 411.0 242 88.0
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 9.8e-113 410.6 242 86.8
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 1.7e-112 409.8 242 86.4
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 1.7e-112 409.8 242 86.4
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.7e-112 409.8 242 86.4
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 2.2e-112 409.5 242 86.0
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.2e-112 409.5 242 86.0
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 2.2e-112 409.5 242 86.4
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 2.2e-112 409.5 242 86.0
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 2.2e-112 409.5 258 82.2
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 2.2e-112 409.5 242 86.0
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 2.8e-112 409.1 242 86.0
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 2.8e-112 409.1 242 86.0
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 6.3e-112 407.9 242 85.5
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 6.3e-112 407.9 242 85.5
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 8.3e-112 407.5 242 85.5
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.4e-111 406.8 352 66.2
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.8e-111 406.4 259 81.5
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 4.1e-111 405.2 242 86.4
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 7.0e-111 404.4 242 85.5
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 3.5e-110 402.1 245 85.3
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 4.5e-110 401.7 243 87.7
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.2e-109 399.4 241 87.6
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.2e-109 399.4 237 92.0
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 9.4e-108 394.0 238 86.1
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.0e-105 386.3 238 86.6
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.3e-104 383.6 242 83.9
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.8e-104 382.5 239 84.1
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 2.4e-103 379.4 247 81.0
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 5.4e-103 378.3 351 63.0
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 7.0e-103 377.9 242 83.1
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 7.0e-103 377.9 242 83.9
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 9.1e-103 377.5 242 82.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.3e-101 373.6 356 62.1
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 3.8e-101 372.1 242 81.8
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 3.6e-99 365.5 241 78.8
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 8.0e-99 364.4 243 79.4
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 8.0e-99 364.4 338 62.1
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.4e-98 363.6 243 79.4
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 1.8e-98 363.2 206 91.3
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 3.0e-98 362.5 238 78.6
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 6.8e-98 361.3 243 77.0
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.5e-97 360.1 242 78.1
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 9.8e-97 357.5 352 59.9
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.3e-96 357.1 241 79.7
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 2.9e-96 355.9 352 59.7
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 2.9e-96 355.9 244 77.5
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 3.7e-96 355.5 241 79.3
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 3.7e-96 355.5 256 74.6
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 4.9e-96 355.1 243 76.5
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.1e-95 354.0 243 76.5
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.4e-95 353.6 351 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 7.0e-95 351.3 243 75.7
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 9.2e-95 350.9 244 76.6
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 9.2e-95 350.9 278 69.4
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.2e-94 350.5 242 76.4
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.2e-94 350.5 352 59.4
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.0e-94 349.7 334 61.4
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 2.7e-94 349.4 245 75.5
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 2.7e-94 349.4 272 68.0
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 5.0e-93 345.1 243 76.5
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 6.6e-93 344.7 243 73.3
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 4.4e-89 332.0 242 77.3
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 8.3e-88 327.8 242 72.7
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 3.5e-86 322.4 238 68.1
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 3.6e-83 312.4 177 94.9
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 3.4e-81 305.8 242 64.9
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 3.0e-77 292.7 234 69.2
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 6.0e-70 268.5 232 61.2
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.9e-68 263.5 191 76.4
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 9.6e-60 234.6 137 92.7
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-54 217.2 122 89.3
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.4e-50 203.4 157 68.2
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 6.7e-45 185.3 103 92.2
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 3.0e-37 159.8 103 81.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 3.0e-37 159.8 103 81.6
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.1e-36 157.9 102 77.5
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 5.5e-23 112.5 60 86.7
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.1e-22 110.5 168 47.6
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 5.1e-21 105.9 63 82.5
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 2.0e-20 104.0 192 32.3


User provided reference genes

Program Settings