Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.9e-207 726.5 452 100.0
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.7e-155 553.9 455 81.8
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.2e-138 495.4 415 81.9
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 2.1e-129 467.2 494 67.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.4e-127 459.5 447 70.9
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 5.2e-120 436.0 446 69.3
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.1e-117 428.3 432 68.8
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.2e-111 408.3 390 73.3
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.0e-107 395.2 434 66.4
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.1e-106 391.7 475 62.7
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-106 391.7 431 66.4
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.0e-104 385.2 385 68.8
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.5e-103 381.3 447 60.2
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 2.0e-103 380.9 433 66.1
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 5.7e-103 379.4 425 66.8
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 9.8e-103 378.6 452 60.6
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.2e-102 377.5 410 69.8
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 2.2e-102 377.5 407 65.8
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.4e-101 374.0 419 66.1
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 2.0e-100 370.9 454 63.7
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 4.5e-100 369.8 434 61.3
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.3e-99 367.5 367 76.3
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 2.3e-99 367.5 409 66.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.9e-99 366.7 441 62.4
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.9e-98 364.4 490 57.6
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 9.5e-98 362.1 431 61.0
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.2e-97 361.7 436 61.2
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 6.1e-97 359.4 451 61.2
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.7e-94 351.3 418 62.7
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 1.4e-93 348.2 401 50.4
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 3.2e-93 347.1 401 50.1
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 3.2e-93 347.1 393 65.9
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 4.1e-93 346.7 401 49.9
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 4.1e-93 346.7 401 49.9
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 7.0e-93 345.9 389 66.8
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 6.6e-91 339.3 419 63.5
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 1.1e-90 338.6 419 54.9
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 9.5e-90 335.5 384 65.1
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 2.1e-89 334.3 472 57.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 2.8e-89 334.0 418 63.6
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 2.8e-89 334.0 396 62.1
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 2.3e-88 330.9 404 49.0
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 7.5e-87 325.9 357 67.2
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.3e-86 325.1 483 54.0
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.1e-85 322.0 416 61.8
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 4.6e-84 316.6 413 59.8
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 3.0e-83 313.9 413 60.5
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 3.0e-83 313.9 472 54.2
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.2e-79 302.0 372 62.1
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.3e-78 298.5 195 75.9
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 1.7e-78 298.1 448 56.9
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 7.1e-77 292.7 358 65.4
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 3.0e-75 287.3 347 64.6
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.5e-74 285.0 346 62.4
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 5.6e-74 283.1 258 57.8
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 6.2e-73 279.6 212 67.5
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 8.1e-73 279.3 190 72.1
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 4.0e-72 276.9 375 60.0
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 4.0e-72 276.9 383 58.5
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.5e-71 275.0 374 62.6
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 9.9e-71 272.3 375 62.9
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 5.4e-69 266.5 176 68.8
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.6e-68 265.0 189 67.2
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.5e-68 263.8 377 61.0
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 7.8e-68 262.7 251 56.2
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.0e-67 262.3 208 60.6
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 8.7e-67 259.2 219 61.2
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 5.6e-66 256.5 251 55.4
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 9.6e-66 255.8 352 60.5
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.8e-65 254.2 209 61.2
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.3e-62 245.4 399 55.9
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.2e-62 244.6 171 66.1
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.0e-59 235.7 195 64.1
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.3e-59 235.3 211 55.9
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.3e-59 234.6 169 64.5
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 3.0e-59 234.2 191 57.6
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 6.2e-57 226.5 129 84.5
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 2.4e-56 224.6 220 53.2
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 9.0e-56 222.6 197 56.9
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 2.6e-55 221.1 127 84.3
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 2.5e-50 204.5 251 74.5
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.1e-45 189.1 144 58.3
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 3.2e-45 187.6 404 42.8
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 3.5e-44 184.1 242 67.8
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 4.6e-44 183.7 177 51.4
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.3e-42 177.2 114 72.8
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 8.4e-38 162.9 92 81.5
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 3.9e-35 154.1 265 56.6
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 4.3e-34 150.6 160 46.9
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 1.1e-32 146.0 122 57.4
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 1.1e-32 146.0 122 57.4
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 4.5e-31 140.6 207 75.4
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 2.2e-30 138.3 421 43.7
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 4.2e-29 134.0 156 41.7
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 7.9e-28 129.8 136 47.8
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.0e-27 127.9 72 86.1
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 9.7e-26 122.9 154 42.2
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.9e-21 108.6 67 73.1
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea HOM05D002444 ORTHO05D009235 5.3e-16 90.5 64 60.9
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.0e-15 88.6 162 35.8
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 2.2e-14 85.1 85 45.9
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 4.4e-10 70.9 145 24.1
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 2.2e-09 68.6 145 24.1
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 1.8e-08 65.5 145 23.4
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 1.8e-08 65.5 144 27.1
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 4.1e-08 64.3 145 22.8
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 4.1e-08 64.3 169 30.2
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 9.1e-08 63.2 139 26.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 9.1e-08 63.2 126 28.6
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 1.6e-07 62.4 164 26.8
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 1.6e-07 62.4 126 27.8
CiPaw.01G104100 Carya illinoinensis HOM05D007128 ORTHO05D009059 2.0e-07 62.0 166 25.9
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 2.0e-07 62.0 233 26.6
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 2.0e-07 62.0 168 29.2
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 2.0e-07 62.0 169 29.6
CsaV3_6G003710 Cucumis sativus L. HOM05D007128 ORTHO05D009059 2.6e-07 61.6 154 27.3
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 2.6e-07 61.6 233 26.6
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 2.6e-07 61.6 233 26.6
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.5e-07 61.2 145 22.1
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 3.5e-07 61.2 151 27.2
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 3.5e-07 61.2 226 25.7
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 3.5e-07 61.2 53 52.8
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 3.5e-07 61.2 170 24.1
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 4.5e-07 60.8 151 27.2
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 4.5e-07 60.8 169 29.6
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 5.9e-07 60.5 145 22.8
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 7.7e-07 60.1 152 26.3
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 7.7e-07 60.1 191 27.2
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 7.7e-07 60.1 155 27.1
Sed0021713 Sechium edule HOM05D007128 ORTHO05D009059 7.7e-07 60.1 154 26.0
CiPaw.01G097300 Carya illinoinensis HOM05D007128 ORTHO05D009059 1.0e-06 59.7 166 25.3
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 1.0e-06 59.7 183 21.3
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 1.0e-06 59.7 155 27.1
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 1.0e-06 59.7 197 23.4
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 1.7e-06 58.9 151 25.2
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 1.7e-06 58.9 163 27.6
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 1.7e-06 58.9 198 22.7
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 2.2e-06 58.5 198 22.7
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 2.9e-06 58.2 166 26.5
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 2.9e-06 58.2 133 23.3
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 2.9e-06 58.2 151 25.8
MELO3C011605.2 Cucumis melo HOM05D007128 ORTHO05D009059 3.8e-06 57.8 151 25.2
Gorai.005G019500 Gossypium raimondii HOM05D007128 ORTHO05D009059 3.8e-06 57.8 152 26.3
THA.LOC104826248 Tarenaya hassleriana HOM05D007128 ORTHO05D009059 3.8e-06 57.8 151 27.2
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 5.0e-06 57.4 163 27.0
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 5.0e-06 57.4 187 20.9
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 5.0e-06 57.4 150 22.7
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 5.0e-06 57.4 189 27.0
Ca_24431_v3 Cicer arietinum L. HOM05D007128 ORTHO05D009059 6.5e-06 57.0 192 22.9
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 6.5e-06 57.0 194 24.7
Gohir.A02G014400 Gossypium hirsutum HOM05D007128 ORTHO05D009059 6.5e-06 57.0 152 26.3
MD02G1232100 Malus domestica HOM05D002986 ORTHO05D003966 6.5e-06 57.0 132 25.8
Nitab4.5_0003215g0040 Nicotiana tabacum HOM05D006740 ORTHO05D008571 6.5e-06 57.0 217 24.4
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 6.5e-06 57.0 144 27.8
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 6.5e-06 57.0 102 29.4
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 8.5e-06 56.6 145 25.5
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 8.5e-06 56.6 218 24.8


User provided reference genes

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