Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 2077.8 1068 100.0
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1870.1 1105 88.5
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1839.7 1105 87.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1773.1 1107 85.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1771.1 1106 84.4
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1733.8 1106 82.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1724.9 1102 82.0
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1723.0 1118 82.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1547.7 1142 72.7
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1510.4 1140 71.4
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1509.6 1139 71.3
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1507.7 1147 71.1
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1490.3 1139 70.7
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1487.2 1155 69.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1487.2 1129 71.3
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1485.7 1135 70.0
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1481.8 1137 70.5
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1480.3 1131 71.1
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1479.5 1135 70.7
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1478.8 1139 70.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1477.6 1149 69.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1474.1 1129 70.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1469.1 1137 70.4
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1465.7 1133 69.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1464.9 1138 69.3
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1463.0 1140 69.0
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1460.3 1138 70.1
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1454.5 1135 69.4
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1448.7 1130 69.0
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1446.0 1136 68.2
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1442.2 1129 68.3
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1441.0 1138 69.4
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1435.2 1134 68.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1434.1 1135 69.1
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1426.8 1132 69.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1423.3 1161 68.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1412.1 1110 68.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1411.7 1130 68.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1411.4 1108 68.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1410.2 1143 67.4
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1407.9 1107 68.0
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1402.5 1140 67.1
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1399.8 1118 68.5
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1397.9 1128 66.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1395.9 1156 65.9
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1394.0 1140 67.5
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1371.7 1109 67.7
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1368.6 1127 66.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1352.8 1125 66.3
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1345.1 1127 64.8
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1344.3 1071 68.3
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1343.9 1103 66.9
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1334.3 1140 64.6
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1333.2 1129 64.8
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1332.8 1135 64.1
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1330.1 1144 63.5
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1328.5 1118 66.1
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1325.5 1087 65.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1320.4 1094 66.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1319.7 1133 63.9
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1312.0 1130 64.0
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1311.2 1132 63.4
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1310.8 1092 65.8
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1308.9 1130 63.0
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1300.4 1138 63.1
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1297.7 1136 63.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1297.0 1184 61.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1276.2 1161 60.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1276.2 1093 63.7
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1272.7 1079 64.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1265.4 1129 61.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1260.7 1088 63.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1260.0 1079 64.3
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1251.5 1079 63.6
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1250.0 1081 63.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1246.1 1059 64.0
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1242.3 1080 63.3
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1241.5 1123 61.8
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1220.7 1110 61.0
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1217.2 1072 63.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1214.1 1105 61.2
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1196.8 1081 60.8
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1194.1 1011 65.3
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1184.1 909 68.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1180.6 1071 60.4
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1178.7 1108 59.0
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1178.3 912 68.8
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1167.5 1279 53.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1133.2 1061 58.1
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1111.7 1090 59.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1106.7 1023 62.1
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1105.9 1077 57.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1087.8 945 64.8
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1080.1 1080 57.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1079.7 934 63.3
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 3.7e-311 1071.6 1369 49.1
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.2e-310 1068.5 1069 56.2
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.4e-305 1053.1 1116 55.3
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 4.1e-281 971.8 927 59.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 6.4e-274 948.0 1020 55.4
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 4.4e-267 925.2 854 63.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.2e-264 917.1 1039 53.7
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 6.2e-237 825.1 517 82.0
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.9e-233 813.5 783 60.0
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.6e-232 810.4 928 53.6
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.9e-230 803.5 855 56.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.8e-221 772.3 1066 42.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.1e-220 769.6 1124 41.0
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.0e-219 766.9 1132 41.4
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.5e-219 765.8 1119 41.9
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.8e-213 746.5 1124 41.3
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.2e-210 736.9 437 88.1
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 2.7e-208 729.9 651 60.5
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 6.7e-207 725.3 678 57.7
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 3.3e-206 723.0 877 52.5
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.2e-205 720.3 425 88.5
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.7e-205 719.5 775 54.8
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.0e-191 674.9 1027 39.3
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.1e-180 636.7 646 57.9
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 4.1e-180 636.3 524 64.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.4e-156 558.1 515 57.7
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.2e-134 485.3 408 66.7
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.7e-122 443.0 348 68.4
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.5e-121 441.8 442 57.5
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 7.2e-108 396.4 359 62.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.9e-105 388.3 228 81.1
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 7.7e-94 349.7 629 39.1
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 3.8e-93 347.4 821 31.2
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.7e-90 336.7 186 83.9
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.1e-89 335.9 350 51.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 5.3e-87 327.0 230 76.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.2e-78 299.3 1032 26.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 8.3e-72 276.6 402 45.8
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 9.5e-68 263.1 190 72.6
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.6e-65 255.0 195 62.6
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 7.5e-65 253.4 141 87.2
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 4.1e-63 247.7 141 87.2
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.6e-62 245.7 1229 22.7
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.9e-61 241.5 142 82.4
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.6e-61 240.4 244 54.5
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.5e-57 229.2 255 51.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.0e-54 218.8 515 32.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.5e-52 212.6 149 81.2
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.1e-51 208.8 173 70.5
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.1e-51 208.8 173 70.5
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 6.2e-51 207.2 115 87.8
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 8.0e-51 206.8 115 87.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.0e-50 204.5 115 86.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.9e-47 195.7 140 74.3
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.2e-41 176.4 140 73.6
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 3.4e-41 174.9 117 72.6
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.5e-41 173.7 539 31.7
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.9e-40 171.8 1107 22.0
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.7e-38 165.2 198 50.0
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 4.6e-38 164.5 138 69.6
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.2e-35 156.4 82 90.2
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.2e-35 156.4 83 88.0
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.8e-35 155.2 83 86.7
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.0e-30 137.5 163 48.5
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.3e-29 136.3 110 61.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.3e-29 136.3 114 68.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 8.1e-27 127.1 153 47.1
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 2.4e-26 125.6 117 60.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 4.0e-26 124.8 134 51.5
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.9e-26 124.0 90 81.1
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 9.0e-26 123.6 110 65.5
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 6.6e-21 107.5 85 62.4
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.3e-20 104.8 95 57.9
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 4.8e-19 101.3 87 59.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.4e-17 95.1 108 50.0
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 7.6e-17 94.0 146 43.8
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 9.9e-17 93.6 110 46.4
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 6.7e-13 80.9 80 58.8
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 4.8e-11 74.7 100 51.0
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.5e-09 69.7 43 76.7
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.5e-09 68.2 45 68.9


User provided reference genes

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