Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 9.4e-200 699.9 333 100.0
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 1.7e-111 406.8 290 69.0
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.2e-80 304.3 277 57.4
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.5e-80 303.9 279 57.0
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.2e-55 220.3 225 50.7
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 7.8e-53 211.8 309 44.3
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 7.8e-53 211.8 193 54.4
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.8e-53 211.8 193 54.4
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.3e-34 151.4 299 34.4
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.8e-34 150.2 291 31.3
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 4.9e-31 139.4 310 33.2
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.7e-28 131.0 143 41.3
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 7.3e-27 125.6 152 38.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.4e-25 121.3 153 41.8
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.4e-25 120.6 151 41.7
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.4e-25 120.6 259 30.9
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.1e-25 120.2 152 41.4
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.4e-24 116.7 303 27.1
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 9.9e-24 115.2 306 29.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 9.9e-24 115.2 151 41.1
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 3.2e-22 110.2 391 25.1
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 3.2e-22 110.2 163 36.8
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 4.6e-21 106.3 306 27.8
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 3.9e-20 103.2 152 38.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 7.4e-19 99.0 173 34.1
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.7e-18 96.7 149 32.9
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 8.1e-18 95.5 153 33.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 2.4e-17 94.0 150 34.0
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 2.4e-17 94.0 129 38.8
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 5.3e-17 92.8 150 34.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 5.3e-17 92.8 150 34.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 5.3e-17 92.8 150 34.0
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.2e-16 91.7 149 33.6
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.0e-16 90.9 213 30.0
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 2.0e-16 90.9 213 30.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.4e-16 90.1 145 36.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 7.6e-16 89.0 133 42.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.0e-15 88.6 164 30.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.8e-15 86.7 183 33.3
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.9e-15 86.3 149 34.9
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 2.5e-14 84.0 152 32.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.5e-14 84.0 156 33.3
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 7.1e-14 82.4 172 34.3
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.2e-13 81.6 167 29.3
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.2e-13 81.6 145 33.8
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.6e-13 81.3 160 29.4
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 2.1e-13 80.9 150 32.0
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 3.5e-13 80.1 167 26.9
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 4.6e-13 79.7 150 32.0
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.8e-12 77.8 153 28.8
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 8.7e-12 75.5 157 28.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 8.7e-12 75.5 193 26.9
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 3.3e-11 73.6 91 44.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 3.3e-11 73.6 152 28.3
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 7.4e-11 72.4 160 28.8
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.6e-10 71.2 153 26.8
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.6e-10 71.2 193 25.9
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.1e-10 70.9 165 28.5
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 3.7e-10 70.1 165 27.3
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 4.8e-10 69.7 151 28.5
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 4.8e-10 69.7 153 26.8
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 6.2e-10 69.3 145 32.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 6.2e-10 69.3 155 28.4
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 8.2e-10 68.9 93 41.9
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.4e-09 68.2 152 26.3
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 2.4e-09 67.4 161 28.0
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 4.1e-09 66.6 122 30.3
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 6.9e-09 65.9 125 35.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 6.9e-09 65.9 176 25.6
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.2e-08 65.1 144 28.5
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.2e-08 65.1 219 25.1
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 2.6e-08 63.9 66 45.5
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 4.5e-08 63.2 137 29.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 4.5e-08 63.2 137 29.2
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 5.8e-08 62.8 170 27.6
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 5.8e-08 62.8 116 30.2
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 5.8e-08 62.8 123 30.1
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.7e-07 61.2 101 35.6
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 5.0e-07 59.7 119 32.8
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 5.0e-07 59.7 197 24.9
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.1e-06 58.5 142 27.5
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 1.4e-06 58.2 57 40.4
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 1.9e-06 57.8 72 34.7


User provided reference genes

Program Settings