Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 2.3e-193 678.7 341 100.0
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 8.0e-170 600.5 344 88.7
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 8.5e-164 580.5 310 92.6
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 8.5e-164 580.5 310 92.6
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 3.2e-163 578.6 310 92.3
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 3.6e-162 575.1 310 92.3
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 7.7e-157 557.4 332 85.5
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 8.6e-156 553.9 341 83.6
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 2.5e-155 552.4 326 84.4
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 2.8e-154 548.9 336 82.7
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 1.4e-153 546.6 309 87.4
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 5.2e-153 544.7 317 84.9
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 1.2e-152 543.5 325 84.9
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 2.6e-152 542.3 315 85.4
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.6e-152 542.3 314 85.4
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 4.4e-152 541.6 318 84.6
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 4.4e-152 541.6 325 83.7
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 7.5e-152 540.8 314 85.0
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 7.5e-152 540.8 315 86.3
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 9.8e-152 540.4 342 80.7
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 9.8e-152 540.4 327 82.9
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.3e-151 540.0 317 83.0
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 1.3e-151 540.0 317 83.6
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 2.2e-151 539.3 317 85.2
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 8.3e-151 537.3 342 79.8
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.4e-150 536.6 315 84.4
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 1.8e-150 536.2 315 84.8
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.4e-150 535.8 310 85.5
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 3.2e-150 535.4 332 80.7
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 5.4e-150 534.6 315 83.8
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 7.0e-150 534.3 308 85.4
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 9.2e-150 533.9 316 84.5
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 1.2e-149 533.5 321 82.9
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 3.5e-149 531.9 322 82.6
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 4.6e-149 531.6 310 84.8
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 5.9e-149 531.2 310 85.5
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 1.3e-148 530.0 310 84.5
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 1.7e-148 529.6 307 83.7
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 3.9e-148 528.5 319 82.4
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 5.0e-148 528.1 317 83.0
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.5e-147 526.6 306 85.3
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 1.5e-147 526.6 316 82.6
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 1.9e-147 526.2 341 78.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 2.5e-147 525.8 342 78.7
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 3.3e-147 525.4 326 80.4
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.2e-146 523.5 310 82.6
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 1.6e-146 523.1 328 80.8
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 1.6e-146 523.1 306 83.3
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 2.1e-146 522.7 310 86.1
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 2.8e-146 522.3 310 84.2
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 3.6e-146 521.9 330 80.3
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 6.2e-146 521.2 318 81.8
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 6.2e-146 521.2 314 81.5
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 8.0e-146 520.8 314 81.5
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.4e-145 520.0 353 75.6
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 1.8e-145 519.6 310 82.6
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.8e-145 519.6 330 80.6
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.3e-145 519.2 324 79.6
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 5.2e-145 518.1 321 80.4
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 1.2e-144 516.9 307 83.7
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 8.3e-143 510.8 308 81.5
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.1e-142 510.4 310 81.0
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.4e-142 508.1 410 67.6
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 7.8e-141 504.2 314 80.6
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 1.3e-140 503.4 309 80.9
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 3.0e-140 502.3 322 79.2
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 6.6e-140 501.1 305 81.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.9e-139 499.6 330 77.3
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 4.3e-139 498.4 330 77.3
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 4.7e-138 495.0 347 75.8
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 5.2e-137 491.5 324 78.4
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.1e-131 473.8 325 73.2
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 1.2e-130 470.3 329 73.9
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 8.1e-130 467.6 334 72.5
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.1e-129 467.2 320 74.1
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 6.8e-129 464.5 345 71.9
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 2.6e-128 462.6 342 70.2
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 7.6e-128 461.1 281 83.3
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 7.6e-128 461.1 353 68.8
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 9.9e-128 460.7 321 74.8
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 6.4e-127 458.0 351 67.0
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.2e-125 453.8 314 74.2
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 3.9e-124 448.7 497 52.9
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 1.6e-122 443.4 419 58.5
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 2.1e-122 443.0 259 83.4
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 6.2e-122 441.4 287 77.7
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.9e-118 429.9 309 74.1
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 6.0e-117 424.9 303 71.0
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.3e-116 423.7 305 69.8
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 2.5e-115 419.5 310 70.6
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.1e-114 416.4 259 80.3
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 2.8e-114 416.0 291 73.9
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 6.2e-114 414.8 311 65.0
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 1.4e-113 413.7 252 80.6
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 4.0e-113 412.1 243 84.0
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 4.4e-112 408.7 306 66.7
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 6.4e-111 404.8 234 85.0
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.4e-110 403.7 306 70.9
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 4.5e-104 382.1 255 75.7
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 1.4e-102 377.1 300 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 1.1e-99 367.5 260 68.5
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.1e-99 367.5 244 76.6
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 8.4e-95 351.3 219 78.5
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.4e-94 350.5 314 60.2
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 5.1e-92 342.0 310 60.6
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.5e-91 340.5 228 74.6
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 2.8e-90 336.3 226 71.7
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 8.2e-90 334.7 300 56.7
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 6.1e-77 292.0 184 78.8
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 1.1e-73 281.2 302 50.7
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.4e-73 280.8 177 79.1
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 1.5e-72 277.3 227 69.6
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 6.3e-66 255.4 158 80.4
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 2.6e-64 250.0 155 76.8
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 1.7e-63 247.3 157 78.3
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.1e-62 244.6 490 35.5
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 2.6e-59 233.4 143 80.4
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 2.2e-58 230.3 120 90.8
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.4e-57 227.6 118 92.4
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 9.8e-51 204.9 227 52.9
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.2e-45 188.0 113 78.8
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 6.3e-42 175.6 270 35.6
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.1e-37 160.6 96 79.2
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 3.2e-33 146.7 292 33.6
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 3.6e-29 133.3 66 93.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 2.3e-28 130.6 307 29.6
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.9e-25 120.9 63 90.5
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 4.1e-25 119.8 92 71.7
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.4e-25 119.4 61 95.1
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.5e-24 116.7 59 94.9
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 6.0e-24 115.9 70 77.1
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.3e-22 110.2 64 84.4
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 4.9e-18 96.3 77 71.4
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 3.6e-13 80.1 60 63.3
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 5.8e-11 72.8 43 76.7
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.2e-10 70.9 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 6.0e-08 62.8 55 58.2


User provided reference genes

Program Settings