Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.6e-42 174.5 86 100.0
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.7e-21 105.1 72 73.6
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 5.0e-20 100.9 71 73.2
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.0e-16 89.0 72 63.9
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.0e-16 89.0 72 63.9
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 9.8e-16 86.7 71 66.2
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 2.0e-13 79.0 74 56.8
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.3e-12 76.3 46 78.3
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.8e-12 74.7 46 78.3
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.8e-12 74.7 60 66.7
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 5.0e-12 74.3 45 82.2
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 5.0e-12 74.3 50 74.0
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.6e-12 73.9 49 73.5
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 8.6e-12 73.6 65 60.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 1.1e-11 73.2 44 77.3
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 2.5e-11 72.0 57 64.9
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.5e-11 72.0 57 64.9
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.5e-11 72.0 57 64.9
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.5e-11 72.0 54 68.5
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 3.3e-11 71.6 51 70.6
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 3.3e-11 71.6 51 66.7
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 5.5e-11 70.9 43 79.1
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 7.2e-11 70.5 54 68.5
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 9.5e-11 70.1 43 76.7
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.2e-10 69.7 57 64.9
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.6e-10 69.3 42 78.6
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.6e-10 69.3 49 67.3
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.6e-10 69.3 70 58.6
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.1e-10 68.9 46 69.6
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 3.6e-10 68.2 68 57.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.6e-10 68.2 67 59.7
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 4.7e-10 67.8 43 76.7
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 4.7e-10 67.8 44 72.7
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 4.7e-10 67.8 59 57.6
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 6.1e-10 67.4 47 66.0
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 6.1e-10 67.4 55 67.3
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 1.0e-09 66.6 44 72.7
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.0e-09 66.6 54 66.7
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.0e-09 66.6 46 69.6
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.4e-09 66.2 45 66.7
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.4e-09 66.2 64 51.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.4e-09 66.2 44 68.2
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.8e-09 65.9 46 67.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 2.3e-09 65.5 51 64.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.0e-09 65.1 66 54.5
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.0e-09 65.1 43 72.1
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.0e-09 65.1 46 69.6
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 4.0e-09 64.7 58 60.3
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 5.2e-09 64.3 45 66.7
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 6.8e-09 63.9 45 64.4
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 6.8e-09 63.9 51 62.7
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 6.8e-09 63.9 45 66.7
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 6.8e-09 63.9 45 66.7
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 6.8e-09 63.9 45 66.7
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 6.8e-09 63.9 45 66.7
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 6.8e-09 63.9 37 81.1
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 6.8e-09 63.9 45 66.7
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 6.8e-09 63.9 45 66.7
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 8.9e-09 63.5 46 67.4
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-08 63.2 46 65.2
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.5e-08 62.8 46 63.0
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.0e-08 62.4 46 63.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 2.6e-08 62.0 45 64.4
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 2.6e-08 62.0 45 64.4
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.6e-08 62.0 43 69.8
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 3.4e-08 61.6 46 65.2
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.4e-08 61.6 44 65.9
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 4.4e-08 61.2 45 62.2
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 4.4e-08 61.2 46 63.0
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 7.5e-08 60.5 45 60.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 7.5e-08 60.5 44 65.9
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 9.8e-08 60.1 43 67.4
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.3e-07 59.7 43 67.4
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.7e-07 59.3 44 63.6
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.7e-07 59.3 67 50.7
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.7e-07 58.2 46 63.0
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.7e-07 58.2 43 69.8
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 4.9e-07 57.8 43 65.1
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 4.9e-07 57.8 43 62.8
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 4.9e-07 57.8 43 65.1
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 6.3e-07 57.4 41 65.9
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 8.3e-07 57.0 43 62.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 8.3e-07 57.0 45 57.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 5.4e-06 54.3 58 55.2
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 7.0e-06 53.9 37 67.6


User provided reference genes

Program Settings