Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 3.9e-122 441.4 216 100.0
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 7.7e-110 400.6 255 79.6
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 2.9e-109 398.7 255 80.4
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 4.2e-108 394.8 255 78.8
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 3.6e-107 391.7 255 78.4
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.4e-105 384.8 255 76.1
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.4e-105 384.0 255 75.7
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.7e-105 383.6 255 75.7
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.7e-104 382.9 255 75.7
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 2.2e-104 382.5 255 75.7
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 5.3e-103 377.9 255 74.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.6e-102 375.6 253 75.5
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 5.9e-102 374.4 255 74.9
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.7e-102 374.0 255 74.9
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.0e-101 373.6 255 74.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.7e-101 372.9 255 73.7
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.5e-101 370.9 255 74.5
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 8.5e-101 370.5 255 73.7
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 8.5e-101 370.5 255 74.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.1e-100 370.2 255 72.9
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 1.9e-100 369.4 256 73.4
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.5e-100 369.0 256 73.4
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 3.2e-100 368.6 255 72.5
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.2e-100 368.2 255 74.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 4.2e-100 368.2 255 73.7
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 7.2e-100 367.5 255 73.3
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.2e-100 367.5 257 73.2
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 9.4e-100 367.1 255 73.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 9.4e-100 367.1 255 73.7
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 9.4e-100 367.1 255 72.2
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 9.4e-100 367.1 255 72.9
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.2e-99 366.7 255 71.8
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 2.1e-99 365.9 255 74.1
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.1e-99 365.9 255 73.3
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 2.1e-99 365.9 255 72.9
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.6e-99 365.2 255 73.3
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.6e-99 365.2 255 73.3
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.7e-99 364.8 255 72.9
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 4.7e-99 364.8 255 72.9
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 4.7e-99 364.8 255 71.8
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 6.1e-99 364.4 255 71.4
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.0e-98 363.6 255 72.2
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.0e-98 363.6 256 72.7
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.4e-98 363.2 256 72.7
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.4e-98 363.2 256 72.7
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.8e-98 362.8 258 72.5
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 2.3e-98 362.5 255 72.2
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.3e-98 362.5 255 72.9
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 3.0e-98 362.1 255 73.3
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 3.0e-98 362.1 255 72.5
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 3.0e-98 362.1 253 73.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 4.0e-98 361.7 255 72.2
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 5.2e-98 361.3 255 72.2
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 5.2e-98 361.3 256 71.9
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 6.7e-98 360.9 255 72.9
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 6.7e-98 360.9 246 74.0
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 8.8e-98 360.5 255 71.0
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.5e-97 359.8 255 72.2
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.5e-97 359.8 255 71.4
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 2.0e-97 359.4 255 71.0
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.0e-97 359.4 255 71.8
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.6e-97 359.0 255 70.6
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.6e-97 359.0 255 71.8
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 3.3e-97 358.6 253 71.9
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 3.3e-97 358.6 255 72.5
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 3.3e-97 358.6 255 72.5
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 5.7e-97 357.8 256 72.3
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.3e-96 356.7 254 69.7
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.3e-96 356.7 254 70.9
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.2e-96 355.9 255 70.2
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 2.2e-96 355.9 255 71.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.2e-96 355.9 254 70.5
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.8e-96 355.5 256 71.9
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 2.8e-96 355.5 255 71.8
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 3.7e-96 355.1 256 71.5
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 3.7e-96 355.1 256 71.5
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 4.8e-96 354.8 253 72.3
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 6.3e-96 354.4 255 70.6
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 6.3e-96 354.4 255 71.0
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.1e-95 353.6 255 71.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.1e-95 353.6 256 71.1
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.4e-95 353.2 253 71.9
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.4e-95 353.2 256 71.5
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 2.4e-95 352.4 253 71.9
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 2.4e-95 352.4 253 71.9
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 2.4e-95 352.4 255 71.4
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 3.1e-95 352.1 256 70.7
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 3.1e-95 352.1 253 69.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 5.3e-95 351.3 255 69.4
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 7.0e-95 350.9 253 71.1
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 7.0e-95 350.9 255 69.0
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 9.1e-95 350.5 294 64.3
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.2e-94 350.1 256 71.1
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.6e-94 349.7 256 70.3
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 1.6e-94 349.7 253 71.5
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 2.0e-94 349.4 253 68.8
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 4.5e-94 348.2 255 68.2
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 5.9e-94 347.8 255 70.6
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 7.7e-94 347.4 255 71.0
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.0e-93 347.1 253 71.1
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 2.2e-93 345.9 306 60.8
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 3.8e-93 345.1 256 69.9
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 6.5e-93 344.4 252 71.0
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 6.5e-93 344.4 252 71.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 8.5e-93 344.0 255 67.8
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.5e-92 343.2 257 67.7
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.9e-92 342.8 262 68.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 4.7e-91 338.2 255 68.2
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.8e-90 336.3 256 67.6
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 2.3e-90 335.9 257 66.5
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.4e-87 326.6 250 64.4
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.2e-86 323.6 240 67.1
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 2.0e-86 322.8 283 60.8
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.7e-85 319.7 240 68.8
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 5.0e-85 318.2 164 91.5
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.5e-84 315.8 240 68.8
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-83 313.5 162 92.0
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 4.0e-82 308.5 251 62.2
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 8.8e-82 307.4 219 71.2
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.8e-80 302.4 205 70.7
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.4e-79 300.1 230 63.9
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 5.9e-78 294.7 161 87.6
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.7e-77 293.1 162 83.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 2.9e-77 292.4 256 57.8
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.8e-77 292.0 255 63.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 3.8e-77 292.0 260 60.8
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 8.6e-77 290.8 159 84.9
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.5e-76 290.0 230 61.7
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.8e-74 283.1 250 57.2
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.0e-74 282.0 238 59.2
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 8.3e-72 274.2 159 84.9
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.4e-71 272.7 231 62.3
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 4.6e-70 268.5 240 55.4
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 3.0e-69 265.8 240 54.2
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 3.9e-69 265.4 222 62.2
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-65 253.4 240 60.0
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-58 230.7 162 68.5
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.6e-57 226.1 246 48.0
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 9.8e-57 224.2 135 79.3
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.7e-53 213.4 286 48.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 8.1e-51 204.5 178 52.8
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 8.1e-51 204.5 114 84.2
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.4e-47 193.7 171 62.0
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.0e-45 187.6 121 76.0
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 8.6e-45 184.5 100 89.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.7e-43 178.7 162 60.5
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.9e-37 159.1 89 84.3
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.5e-36 157.1 84 83.3
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.9e-36 156.8 83 88.0
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.9e-36 156.8 83 83.1
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 9.6e-36 154.5 268 39.9
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.1e-35 153.3 77 90.9
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.1e-35 151.4 89 80.9
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.8e-34 150.2 89 79.8
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 4.0e-34 149.1 77 92.2
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.6e-33 146.4 89 78.7
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.5e-33 145.6 77 87.0
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 5.8e-33 145.2 196 37.8
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.9e-31 140.2 81 82.7
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.2e-31 139.4 81 82.7
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-30 134.8 75 84.0
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-30 134.8 75 84.0
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-30 134.8 75 84.0
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-30 134.8 75 84.0
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.3e-29 134.0 81 79.0
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.0e-29 132.9 75 82.7
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.6e-28 127.9 75 80.0
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.8e-26 123.6 76 78.9
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 3.1e-26 122.9 61 96.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.0e-26 122.5 71 81.7
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 5.3e-26 122.1 152 44.7
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 4.9e-24 115.5 84 70.2
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.1e-22 110.2 73 76.7
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.4e-15 87.4 64 68.8
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.8e-11 73.2 61 59.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 3.7e-11 72.8 58 63.8


User provided reference genes

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